RNA id: XM_034311752.1


Basic Information

Item Value
RNA id XM_034311752.1
length 4888
RNA type mRNA
GC content 0.56
exon number 31
gene id tut4
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24023625 ~ 24046654 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tacccacaatgcacctcgGCGAGAAGTTAACATGGCGCCCGGGGCCTTGaatgagcaaaacaaaaacacaagcgGAGAAATGGGCCGCGTTTAATTAGCCATTAAAGGGAAGTTTTACCAAaagtagagagaaaaaaaccgTAGAATAAGCTCGTCATGCGTGCATGGGGTGTGTGCTGCTAATTTATTTGGGATTTCTGAATTTTTGGTTCGGACGCGATCGTCCTGCAGAGCCTCTgggctgttttattttaattttctttttaatttttttttttttttagttttacacaaacacacacacacacacacacacacacccgcttGCAGTGTGAGCACTATGGACGAGACCAAAAGCCCGCTGAAGTCAGGCAAGCCGTCTCGCCCGAGCGGGAGCAAGGCCTCATCCAGAGCGCAGAAAGAGCGCGAGAACGCCAAGACGCCGAATCGCAACAAAAACAGCGCAGCGTCCAGGGTGAAGGAGGAGGGCCAGGGTGGGCACGCCGGGGGCAGAGGGCCGGCGGGAAGCCCTCAGGAGGCGGGCAGAAGCAAAGCGCGCAGGCTGACGGGGAGAACGGGCTCGGGGGAGAGAGGCAAGGCCAGGTGTCAGACTCAGCAGGGGGTCAGGAGCGGAAACCTCACTCCACTCAGCACCAAGGAGGAGAACACGGCTCCGAGTAAAACCCCCAGAGCTGCGGGGAAGGACAGACACacggGCGAGGTGTCGGCGAGACGGGCGGCGGAGAGCGCTCCTGACGCCGCGGACGAGACGAACCTGACCTCAGATCAGCAGCTGGGACTGAAACAGGCCGAGGAGAGACTGCAGAGAGACTACATCCACAGACTGACCAAGCAGTCCCCCGATTACCCAAATTTCCAGTATCTATGCAAACTCTGCTCGGTTCACGTGGACAACATCCAGGGTGCTCACAAACACATCAAAGAGAAACGGCACAAGAAGAACATcatggagaagCAGGAGGAGAACGAGCTGCGTTCGTTACCCCCTCCGTCTCCGGCTCACCTGCGAGCGCTGAACTCGGCCGTGATGGAGGCGGCGCAGGAACACGGCATCTCGGAGCAGGAGTTCCAGCAGAGACAAGCCGTGCTGCAGAGCATGGAGCTGATCATCCAGAGACATTTAcctgcgTGTTCTCTGCGTCTCTACGGTTCCTGTCTCACGCGGTTCGCCTTCAAGTCCAGCGACATCAACGTCGACGTGCTCTATCCCTCCGGTATGACGCAGCCTGATGTTCTCATCCAAGTGCTGGACATCCTGAAGAAGAGCGATGAATTCTCAGACGTGGAGTCGGACTTCCATGCTAAAGTTCCCGTCATCTTCTGCCGTGATGTGTCCCGTGGTTTACTGTGTAAAGTGAGCGCAGGAAATGATGTCGCGTGCCTCACCACCAATCACCTGGCAGCGTTGGCCAAGCTGGAGCCTCGTCTGGTTCCTCTGGTGCTGGCATTCCGCTACTGGGCCAagctgtgtCATGTGGACTGCCAGGCCGAGGGCGGGATTCCTTCCTACTCCTTCTCTCTGATGGTCATCTTTTTCCTGCAGCAAAGGAAGCAGCCCATTCTACCTGTGTATCTCGGCTACTGGatcgAAGGGTTCGACGTGAAGCGTGTGGACGAGTATCACCTGACCGCCATTCAGTCGGGACACTTTGTGGGGTGGGAGCACAGAGCGGGCAGCGCTAACGAGGGGCGCGGAGACAACAAGACCAAAAACGAACCCCAAAAACCCAACGGCCAAAAATCGCCTGAGAAGAGGAACGAGAACCAGAAGGGCAGGaCTCATCTGGTGCTGGAGAACACGGAGAGCGTCTGTCTCGGCCAGCTGTGGTTGGAGCTGCTGCGTTTCTACACTCTGGAGTTCGCTCTGGAGGATTACATCATCAGCATTCGGCTGAAGGAGCTCCTGCCCCGAGACGTGAAGAACTGGCCACGCCGCCGCCTCGCCATCGAGGACCCGTTCGCCCTGAAGAGGAACGTAGCGCGGAGTCTGAACAGTCAGATGGTGTTCGAGTACATCCAGGAGCGATTCCGCACCGCGTACCGATACTTCGCCTGTCCTCAGAGCCGAAACGGACACGCCCCCGAGCGAGACGTGCCGCGGGCGCCTACGAGCCGGCCGACCGGATCACGCGCCATCGAAACtaagagaggagaagaagaggacGGTGCGAACAGCACCGACGACGATGAGGATGAAGACGAGGACGACGATGATGAAGACGAAGCTGGAGATGAAGAGCGGCGCGTGAGCAGAGGTTTAGCCAGACTGCTTGTCGAGGACGAGGACGAGGACGGCGTCCGTCACTCCTCTTCCCCGACCCCGTCCCCTCACAACGGCCTGTTCCCAGACAGCGACGAAGAGGAGCGGGACGAAGGGGGACGGAAAGGTCCGGAACAGGGCAGCATCGCGCCGGAGGATCTGCACTATACCTTCGACAGGATGATCTTCACTGGAGGAAAGccCCCGACGGTGGTGTGCAGTATCTGTAAGCGAGACGGCCATCTGAAAGACgactgtcctgaagactttaagAAGATGGAGCTGACGCCGCTGCCTCCCATGACGGAGCGCTTCAGAGAAATCCTCGACAACCTGTGCAAACGCTGCTACGatgagctGTCGCCGTCTGTGGGAGAGCAGCAGAGGAGGGAACTGATTCTAGCCAGTCTGGAGCGCTTCATTAGGAAGGAGTATAATgataaaGCCCAGCTGTGTCTGTTTGGTTCCTCTAAGAACGGGTTCGGTTTCCGTGACAGCGACCTGGACATCTGTATGACGCTGGAGGGACACGACACAGCAGAGAAACTGAACTGTAAAGAGATCATCGAGGGATTAGCCAAGGTGCTGAAGAAACACGCAGgtctGAGGAATATCTTGCCTATAACGACCGCCAAAGTGCCTATCGTTAAGTTTGAACACAAGCAGAGCAGTCTGGAAGGAGACATCAGCCTTTACAACACACTGGCTCAACACAACACACGTATGTTGGCCACGTACGCAGCCCTGGACCCACGTGTTCAGTATTTGGGCTATACCATGAAAGTGTTTGCAAAGaggtGCGACATCGGTGATGCGTCGAGGGGAAGTCTCTCGTCTTACGCCTACATCCTCATGGTGCTGTACTTCCTGCAGCAGAGACAGCCTCCCGTCATCCCCGTCCTGCaggagATCTACGACGGGAGCTCCGTTCCTCAGAGGATGGTGGACGGCTGGAACGCCTTCTTCTTCGACAACGTGGACGAGCTGCGGCGGCGTTGGCCCGAGTTCCAGCAGAACCGTGAGACGGTAGGGGAGCTGTGGCTCGGCCTGCTGCGCTTCTACACCGAGGAGTTCGACTTTAAAGAGCACGTGATCTCCATCCGGCAGCGTAAACGCCTCACCACCTTCGAGAAACAGTGGACCTCCAAGTGCATCGCCATCGAAGATCCCTTTGACTTGAATCACAATCTTGGTGCCGGAGTCTCACGGAAaaTGACGAATTTCATCATGAAGGCATTCATTAATGGCAGGAAATTGTTCGGAACGCCGTTTTATCCAAAGCTGGGGATGGAAgcggattaCTTCTTCGACTCGAAGGTGCTGACGGACGGCGAACTCGCTCCGAATGACCGCTGCTGTCGGATCTGTGGCAAAATCGGACATTACATGAAGGACTGCCCAAAGAGGCGCAGaatgaagaagaaggagagcGATAAGGATGAGGAGGTGCGTGAGGAGGACAGAGAGCCGAGAGAGAGACGCTGTTTCCAGTGTGGATACGTAGGACACGTCCGGAGAGAATGTCCTGATTACAGACACCTCCGACAGAGAGGAGCTCCTACacaggTTCCTCAGATGGTCCGTGCCATGGTGAGCTCGCAGGCCATCCCCATTCCTCAGAGTGGTACGTCCCAGGATCGACCCGGCCGGACCAGGCAGCCATCGGAATGCTCGGACACGCGTCAGACTCCTCCGTACTCCCCGCAGACGTCTACGTTCATCCAGCCCTCCGTCTCTCCTCAGTCGTCTCAGAGCGGCAAGCCTTCCCCGggctcctcgtcctcctccgcTCCGTCCAAATCCTCCCatcatccctctctccctcctcccgCCCCTcctcctcagcagcagcaggttcatctgtctctctttggtTTCAATCCCTCTCAGTACATGGGCATGCTCTCACCGGGGACCTGGCCCTCCCATCCGCCCTCCCCGGGGGTAAAGTACCCTATGAGGAAGGGACAGGGGAACGGAGGGGCGGGGCACATGCCGAACCCCACCTCCGTTAACCTCAACGACCCCAGTATCATCTTTGCCCAGCCGGCGGGGCAGGACGGAGGGCCACACTGGCACAATCACCATCTGAACAACCCCGGGGCAATGGTGGCCAACGGCACGGTGGGGAAGtcagCAGGTTTCCAGGCTCCGTTTGGTTCTGTAGGTCAGGTCTCTCGCTCGCTGGGCCACAGCGGTGCTGGTTCGATATCCGTCACGTCCTCCTGGGGTTTCAGCATGCCGCAGACGTACGTGCAGCAGTCCAACAAGCCCTTCATCTCCCAGGGTGCAGTGGCGAATCAGCACTTCCCCTTGCTGCAGTCCGGCCGTCCcgtcaacctcagctacatccaGCAGAAGAAATAACGAGCGCAGACTCTTTTCATTTCAAACCAACGCCTGAGGTCCTTATCGAACGAcaatgaagaggaaaaaaaaaagaattaagaaAGTCTAACTTGGCATTTGGTCAcaagactttttaaaatgaattttatcattttttgtacagtttttacattaatttttttgtctcatcacATTGATTTGTGATAAGAAatgtcaaatattttaataccCCTATTTTTAAAGGGGTCCCAAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308266 lncRNA downstream 48042 23974201 ~ 23975583 (-) False LOC113530810
TU308247 lncRNA downstream 143297 23880087 ~ 23880328 (-) True G260371
TU308245 lncRNA downstream 148309 23874519 ~ 23875316 (-) True G260369
XR_004579700.1 lncRNA downstream 150750 23868507 ~ 23872875 (-) True LOC117599235
TU307890 lncRNA downstream 500917 23522215 ~ 23522708 (-) True G260071
XR_004579699.1 lncRNA upstream 89835 24136489 ~ 24140106 (-) True LOC117599232
TU308490 lncRNA upstream 166680 24213334 ~ 24225958 (-) True G260548
TU308500 lncRNA upstream 255351 24302005 ~ 24316415 (-) False reps2
TU308533 lncRNA upstream 258575 24305229 ~ 24306670 (-) True G260581
TU308888 lncRNA upstream 303601 24350255 ~ 24435098 (-) True G260823
XM_034311923.1 mRNA downstream 2676 24013748 ~ 24020949 (-) False LOC113530771
XM_026921079.2 mRNA downstream 2677 24013748 ~ 24020948 (-) True LOC113530771
XM_026921142.2 mRNA downstream 43930 23973365 ~ 23979695 (-) True LOC113530810
XM_034311921.1 mRNA downstream 71987 23928316 ~ 23951638 (-) False wdr63
XM_034311919.1 mRNA downstream 71987 23928316 ~ 23951638 (-) False wdr63
XM_034312124.1 mRNA upstream 18608 24065262 ~ 24072855 (-) True LOC113530544
XM_034311702.1 mRNA upstream 93461 24140115 ~ 24154488 (-) False podn
XM_034311703.1 mRNA upstream 93461 24140115 ~ 24154488 (-) True podn
XM_026921304.2 mRNA upstream 114576 24161230 ~ 24164179 (-) True scp2b
XM_026921305.2 mRNA upstream 114576 24161230 ~ 24164166 (-) False scp2b
TU308180 other downstream 259462 23763674 ~ 23764163 (-) True G260310
XR_004579695.1 other downstream 783279 23198582 ~ 23240346 (-) False LOC113530288
TU306971 other downstream 1574198 22446030 ~ 22449427 (-) True G259306
XR_004579748.1 other downstream 2069020 21929175 ~ 21954605 (-) False fyco1a
trnaq-uug_7 other downstream 2668928 21354626 ~ 21354697 (-) False trnaq-uug_7
XR_004579755.1 other upstream 455079 24501733 ~ 24508467 (-) False tent5ab
TU308938 other upstream 458974 24505628 ~ 24508333 (-) False tent5ab
XR_004579701.1 other upstream 741036 24787690 ~ 24794897 (-) False si:ch1073-157b13.1
TU309105 other upstream 834304 24880958 ~ 24883145 (-) True G260947
TU309088 other upstream 937805 24984459 ~ 24990531 (-) False si:ch211-149b19.4

Expression Profile