RNA id: XM_034312017.1


Basic Information

Item Value
RNA id XM_034312017.1
length 3210
RNA type mRNA
GC content 0.49
exon number 24
gene id acap3a
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20783966 ~ 20812524 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAACAGTGCAAGAAGGATGAAATGatatcaGAATGTCTGGAGAAGTGCAGCGAGAGTCTGCAGGAGATAGTGAACTACCACATGATCCTGTTTGACCAGGCACAGAGATCTGTGAAGCAGCAGTTGCACAACTTTGTCAAAGAggatgTGCGGAAGTTTAAAGAAACGAAAAAGCACTTCGATAAGGTGCGTGAGGACCTGGAGATCGCTCAGGTGAAGAACGCTCAGGCCCCAAGGAACAAGCTGCACGAGGTGGAGGAGGCCACCAGCACCCTCAACGTCACCCGCAAGTGCTACCGCCATCTAGCACTGGACTACGttctgcagATCAACGTCCTTCAGGCCAAGAAGAAATTTGAGATCCTAGATGCAATGCTGTCGTTCATGCACGCTCAGTACTCGCTCTTTCAGCAGGGTTTTAATCTGCTAGATGAGATCGACCCCTACATGAAGAAGCTGGCAGCAGAGcTGGACCAGCTGGTGATTGATTCAGCGATGGAGAAAAGAGACATGGAGCACAAACACGCTACGATACAACAGCGGACTCTTCTACAGGACTTTGCCTACGATGACCCGAAGGTGGAGTTCAACGTGGACGCTCCCAACGGAGTGGTGATGGAGGGCTACCTGTTCAAACGGGCCAGCAACGCCTTCAAAACGTGGAACAGGCGGTGGTTCTCCATCCAGAACAGTCAGCTGGTGTATCAGAAGAAGCTGAAGGACTCACTGACTGTGGTAGTAGAGGACCTGAGACTGTGTTCGGTCAAACCCTGTGAGGACATCGAGAGGAGGTTCTGCTTTGAAGTGGTGTCTCCTTCCAAGAGCTGTATGCTGCAGGCTGAGTCAGAGAAACTCAGACAGGCCTGGATCCAAGCAGTGCAGGCCAGCATCGCCTCAGCCTACAGAGAGAGTCCAGACAGCTACTACACTGAGCGTCTGGACCGGACAGCGTCTCCCTCCACCAGCAGCATCGACTCGGCCAGCGAGCCGCGAGAGCGCAGCGTAAGGGCCGAAAGCGTGCTGCAGAGGGTGCAGTGTGTGCCAGGCAACGATGTGTGCTGCGACTGTGGCCAGGCCGATCCACGCTGGGCCAGCATCAACCTGGGCATCCTGCTCTGCATCGAGTGCTCCGGGatacacagGAGTTTGGGGGTGCACTGCTCCAAAGTCCGCTCTCTCACCCTGGACTCATGGGAACCTGAGCTACTCAAgTTGATGTGCGAGCTGGGCAACAGTGTTATAAACCACATCTACGAGGGCACGTGTGAGGAACGGGGCATGAAGAAGCCAGGAGCCAACAGCCCCAGGCAAGAGAAAGAGGCGTGGATTCGAGCCAAGTACGTGGAAAAGAAATTCCTAAAGAAGATGGCAACAGCGGAAGCCCTGATGAGCAGCGAGAGAAAGTCAGAGAGGCGGTGGGCTGCAAAAAAGTGTCGACGCCACAACAGCGCCACCACCATGCCCAAACACCGGCGGAAATACAGACAGGATCCCAGCTCGGGTTCCCTCTGCTCAGCCAGCACCGCTTTGGAGAGAAAGTTCAGGCGAGATTCGCTCTTCTGTCCTGATGAACTGGACTCCCTGTTCTCCTACTTTGACACCAGCTCAGGGCCTCGCAGTCCTGCAGGTCTCAGCAGCGACAGCGGCCTGGGCGGTAGCAGTGACGGCAGCACTGACGTCCTTCTGTTCGGCTCGGTGGTGGACAGCGTCACCGAGGAGGagtgtgaAGTGTCAGAGGACTCAAGTGGAGAGGTGGAGCTGGAGCCGGAGGCGTCAGACCCGGAGGATGTGCGTGAGCTGCATCCAGGCGCACTGCTCTATAAAGCCTGCCAGGCTCGTAACCTGCCCATCATGGCTGAAGCACTGGCACACGGCGCTGAAGTCAACTCAGTCAATGAGGAGGACGAGGGCAAGAGCCCGCTCATACAGGCCGTGATCGGAGGCTCTTTAATAGCATGTGAGTTTCTGCTACAAAACGGTGCAGACGTCAACCAAAGAGACCTAAAAGGAAGGGGCCCGTTACACCATGCTACGTATTTAGGGCACACAGGGCAGGTGTGTTTGTTCCTGAAACGAGGAGCCACACAGAACGACGGAGATGATGACGGTCAGGATCCTCTCAGTATCGCGGTGCAGGCCGCCAACGCCGACATCGTCACTCTgctGCGTCTGGCTCGGATGAATGAGGAGATGAGGGAGTCGGAGGGGCCGTTGGGACAGCCAGGTCAATACCCAAGCAGCAGTCCTACAGAACAGCAGCGACACGACGTATCTGGACATCTTCCGCGAGTTTTCCCACATGGCATCTCACAACCCTGAGAAGCTGAAAGCGCAGGAGCATTCACTTTCGCCACTCCTTCAGAGTTTGATGGACGTTTTCCTGTGGACCTGAAAACACGAAAAAGAGATTGAACTTCATATTTCACATGGATACTGCGCAGGCTAGAATTATAAAACCACATTATTGACACAGAGTTAGTAAAATAATAGAGCTTACAGAAGCTGAGTAATCAGAAACGAGAACAGAGCTGTAATCTAGAATCAGTTACAAACACGTTCTTTTGAATGTTTCTGTTAATTTGAATGTGCAAAGgtttctttacagaaatgttGTTTTGGAAGCTTTAATGACTTTATGGGGATCAGCTGGACTTatcctccattttctttttttaattttgcctaCATCATTTTTGgggtattttgtattttaatattgtttagaCTTTCAGAGTCAATAGTGAATATTAAAGCTTACATCACTACAGTTATTATACAGGATTTCTTCAGTAGTTCATGGCTGCATGTatgtacacaaaaaaaaaaaaaaaaaaaaatgaagaaatctCAGTCTTTGCTCTTGTCTCAATgcatttattatctttatttgcTGAATAAGTCCATTGTTtagttttcttttattcaaaAGAACATGGTAATGAATCCCATTTTGCAGTATCATGTATTTATGACTGCAAATAGTTTGTCTTAAGCTCTTTTCCAGTTGTGTTTGGTGTGAAGTGTGATGTTCAGTGATGACTATGCTGGTGTAGTCCTACATTCGTCCTGCTCTTTATTCTGTACAGTTACCATGAAGCATCGCAAACTCAATGGCAGATGTTGTACATGTACAGTACTTTTTAGATGCAAAATGCTAATATATCATGAGAATTGTGGTATtttgtaacaaaaaataaaactaaaataaa

Function

GO: NA

KEGG:

id description
K12489 ACAP; Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305953 lncRNA downstream 7257 20776149 ~ 20776709 (-) True G258411
TU305785 lncRNA downstream 172907 20610311 ~ 20611059 (-) True G258268
TU305773 lncRNA downstream 190805 20589758 ~ 20593161 (-) True G258258
TU305751 lncRNA downstream 260321 20522552 ~ 20523645 (-) True G258242
TU305676 lncRNA downstream 263763 20518425 ~ 20520203 (-) False nfe2
TU305972 lncRNA upstream 71275 20883799 ~ 20884095 (-) True G258424
TU305980 lncRNA upstream 88754 20901278 ~ 20902757 (-) True G258427
TU305993 lncRNA upstream 141102 20953626 ~ 20953852 (-) True G258437
TU305999 lncRNA upstream 160873 20973397 ~ 20976261 (-) True camk2n1b
TU306176 lncRNA upstream 341382 21153906 ~ 21167598 (-) True G258596
XM_026920114.2 mRNA downstream 1206 20776902 ~ 20782760 (-) True ube2j2
XM_026920509.2 mRNA downstream 10899 20754662 ~ 20773067 (-) False hipk1a
XM_034311888.1 mRNA upstream 16864 20829388 ~ 20868004 (-) True LOC117599256
XM_034312194.1 mRNA upstream 73642 20886166 ~ 20899911 (-) False ints11
XM_026920243.2 mRNA upstream 74576 20887100 ~ 20899910 (-) True ints11
XM_026921038.2 mRNA upstream 93485 20906009 ~ 20915109 (-) True zgc:193690
XM_026920970.2 mRNA upstream 161860 20974384 ~ 20976330 (-) False camk2n1b
TU305550 other downstream 512059 20252170 ~ 20271907 (-) True G258077
XR_004579656.1 other downstream 664017 20110463 ~ 20119949 (-) False mlh3
XR_003403201.2 other downstream 674756 20100999 ~ 20109210 (-) True kansl2
XR_003403208.1 other downstream 680055 20103774 ~ 20103911 (-) True LOC113530994
TU305224 other downstream 1162406 19615527 ~ 19621560 (-) False magi3a
TU305957 other upstream 18304 20830828 ~ 20867958 (-) False LOC117599256
TU306159 other upstream 356462 21168986 ~ 21169698 (-) True G258580
trnaq-uug_7 other upstream 542102 21354626 ~ 21354697 (-) False trnaq-uug_7
XR_004579748.1 other upstream 1116651 21929175 ~ 21954605 (-) False fyco1a
TU306971 other upstream 1633506 22446030 ~ 22449427 (-) True G259306

Expression Profile