RNA id: TU411888


Basic Information

Item Value
RNA id TU411888
length 253
lncRNA type read_through
GC content 0.45
exon number 2
gene id G347652
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 120309 ~ 138813 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAAATGAGCCGCAGCAGGTGTTGTGCAGTCTCAGTGTAATTCAGCGTAACCTCTCTGTGTGTTAATACAGAAACATAAAGAGCACGTCTCCCTGCAGAACACACTGGATTCAGATCTAGAGCGCTCAGAGAGCACATCTAGTTAATAAAGCAGGAAGtctgtcagGCTCCATCACAGCATCACTCTGCAAGACCCACACCACTTCTCTCTCAGTAATGGAATGAATCAATAAGAGCTCTGTAGATCTGTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411870 lncRNA downstream 85531 17440 ~ 34778 (-) True G347634
TU411860 lncRNA upstream 401 139214 ~ 141057 (-) False LOC117595978
TU411853 lncRNA upstream 36210 175023 ~ 206293 (-) True G347623
TU411951 lncRNA upstream 190101 328914 ~ 329608 (-) True G347703
TU411952 lncRNA upstream 194429 333242 ~ 333755 (-) True G347704
TU411911 lncRNA upstream 215514 354327 ~ 355340 (-) True G347672
XM_034298969.1 mRNA downstream 3804 95456 ~ 116505 (-) True LOC117595914
XM_034298970.1 mRNA downstream 28440 86459 ~ 91869 (-) True LOC113525747
XM_034298972.1 mRNA downstream 39959 73680 ~ 80350 (-) True LOC113524950
XM_034299331.1 mRNA downstream 48825 61601 ~ 71484 (-) False paip1
XM_034298966.1 mRNA upstream 22207 161020 ~ 184542 (-) True LOC113528268
XM_034298965.1 mRNA upstream 36503 175316 ~ 184551 (-) False LOC113528268
XM_034298964.1 mRNA upstream 36503 175316 ~ 184549 (-) False LOC113528268
XM_034298963.1 mRNA upstream 53736 192549 ~ 201990 (-) True LOC117595911
XM_026916720.2 mRNA upstream 66667 205480 ~ 210705 (-) False LOC113528266
TU411851 other downstream 20647 86663 ~ 99662 (-) True G347621
TU411899 other upstream 58579 197392 ~ 201961 (-) False LOC117595911
TU411849 other upstream 67680 206493 ~ 210642 (-) False LOC113528266
TU411850 other upstream 67680 206493 ~ 210642 (-) False LOC113528266
XR_004577111.1 other upstream 91712 230525 ~ 237272 (-) False LOC117595925
XR_004577112.1 other upstream 91712 230525 ~ 236364 (-) True LOC117595925

Expression Profile