RNA id: TU412162


Basic Information

Item Value
RNA id TU412162
length 3075
lncRNA type inter_gene
GC content 0.45
exon number 5
gene id G347859
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 742817 ~ 746935 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAACGTGTTTACAGATAGGCTTAAGTTCtatataataatctaataatgagaaatatctgataaccttttctttcttcatgaTACCTTCTCACGTGTAAAGATATAATATTTTGCAGTGTAGCTGAGGAACTGCAGTGTTCCTGAGATGTTTAATGTGTAAAGCATTTTAATTAGATTAAAACTGAAGTGCTCAGTCGTGCAGAGCGCCTCATTGTTTTGGTTTACTgagaagtttatttttaaaccttcaacaaattttatttttacttcaacatgagttttttttaaacactaagGACCAAATTAACTGTTTTATTTGGACCAAGTGAAAATCACGGCCTGATATAGTGTGAAGAGagtatgaaaattattattttttccccataatgAACACAACGCCTAAAAATCGTTTACGGAACTGGATCCATTAaagctgtaattaaaatgtgtataaataaactaaaaaacagAGTATATATAAATCTGAATCATCTCCAGGATCGTCTTCCTTGTTTACTGAGGAATCAAACATCTTTCATTTGGAGAAAACGTCGGAAAACTGAAAGttccagcttcacctctgacggttacaaagcgctgacactggagactccttccatacatgttacataaacatctccttccagaaaacGTTTAGAAGTATAGTATGAAGTTAGAAAGCTACAATGATGACAAATCAGTCAGCGCAGGACACCAGGGAGGATTTGATcagattttaatgaaaaagaagaaaacaggagCAGAAGAGAAGCTCTGAGAGAAACGCTACGCCACAACATGTCCTCCTTCACCCCcgtatatattacacacatctGTTCTGCTTATGTACACgccacaaccacacacactatttataacacagatctcacacacacacacaccgtggcAGTTTACTCTCActactccatcacacacacactcacacacacacgcacaggggACCCTCCTGAAATCCCCCCAGCCGAGAGCCGAACCCATGAGCAGCGGAACCACACAGGAAGTGGACAAACGCCTAACACACTAACGACTGCACACGGAGACAGAAAGAACGAGGCGTCATGCACGCAGGAACGGTTTATGGAAGCGTAAGCACCACAGAATATAGCTGAATATAATATTAGTGACGAGAGAAGGGAGATTTTCAACACCGCGTACACGTCTGCTGCAGAGTCACGTGCGAGAGAGGTCAGGTCTCCAGTACTCGGGTTCTAGACGCGTTCCGGTTCTCTTTAATGTGTTTGGGTTCATGTTTGTCTCACACAAAGTCCTCGAGGTCTATCAGAGCTGATCAGGATGTTCAGCGGAATATTAACACACAGGCGATGCACGACTGGAGGCAGCGTCccaaattacatttacagcactttttatctGACGCTAAGccttacccataatgcactgctgcAGGTGCTTGTGGTGTGTCATAAAGTTGTCAGTGTGCTGTACACGTTAAAGGCTTTAATATCACAAACATTTTAGTACACAACTCTGAGGACTGTAGATGTCATGGGAAAAGCAAGGATGAAGAGATAGACACAGTcagtctctctctctctctctctctctctctctctctctctcagaaaagCGCTCCACTCGTTTAGCTATGACAGTAGTTCTGCTCTCTCAAATGAACCTGTAGAACATTCATATACAGaaaactataaacacacacaaaaaaaacaatccacatTATAGTCAGGATTCATTCATAACTCCAGTGTGGGGAgggagtgaacacacacacacacacacacacacacacacacacacacacacaaaaacgaTGAACACAGGCAGTAGTGCTGAGCGGTGAGGGACCACAGggctgacacaaacacacacacacacacacacacacacacacacacacactcactcactcctccaGTTGGTTCCTTAAAGGAACATTTCAGCCGTAAATGAAACGTACACAGTTTCCTCTGATCCTCTGATCAGCCTGAACATGGAGCTTGAGGTTAATGTACAAACTGCACGTCTAAcgcatcacacactctctctaataCGGCTTTATCGGAGTATAAAAGACTCGTGTACATTTCATTCTGCGCTGAACTGCAGATTTAAGGCCGTGAGCGTACAGTAGGCTCAGAGACACAACATATCACAAggacaggaaaagaaaacaaccattacattttttttttaaaaaacaaaaagaaaaaaataacacacaaaaaaacgtCTCAAGTGTCTACGTCTCtgatgctaacatgctaatttaTGATTAGCGCAGAACCACGCTAACAAGTGCTCCAGGACTGAAACCCAGAAAAGAGTGTCTcaaaatgacatcatcatcttcatcatcatcatcatctctgacTCTCTTCCAGCGCCGCTACATCAAGGCTGTCCAGTTTCCGGTTCTCCTCAGGGGAAAGACTGCAAGCTGATTGGTTGGGTCTGGCTCATGGTCAGAGCTGATTGGTTGGGTCAGACTGTCACTCAGAGCTGATTGGTTGGGTCTGGCTCATGGTCAGAGCTGATTGGTTGGGTCAGGCTCATGGTGAGAGCTGATTGGTTGGGTCAGGCTCATGGTGAGAGCTGATTGGTTGGGTCAGGCTCATGGTGAGAGCTGATTGGTTGGGTCAGGCTCTCACTCAGAGCTGATTGGTTGGGTCAGGCTCTCACTCAGAGCTGATTGGTTGGGTCAGGCTCATGGTGAGAGCTGATTGGTTGGGTCAGGCTCATGGTCAGAGCTGATTGGTTGGGTCAGGCTCTGGTCAGAGCTGATTGGTTGGGTCAGGCTCTCACTCAGAGCTGATTGGTTGGGTCAGGCTCATGGTCAGAGCTGATTGGTTGGGTCAGGCTCTCACTCAGAGCTGATTGGTTGGCTTGGGCTCATGGTCAGAGCTGATTGGTTGGGTCAGACTCTCACTCAGAGCTGATTGGTTGGGTTGGGCTCATGGTCAGAGCTGATTGGTTGGCTTGGGCTCATGGTCAGAGCTGATTGGCTGGAGCATATGTCAGTCAGGAGTGGGCAGAGTAGAGTCGTAAGGCCTGGTGCAGGCTGTTGAAGGAGGGGGCGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412129 lncRNA downstream 27372 708554 ~ 715445 (-) False G347847
TU412171 lncRNA upstream 10098 757033 ~ 757336 (-) True G347864
TU412173 lncRNA upstream 16388 763323 ~ 765368 (-) True G347866
TU412178 lncRNA upstream 19130 766065 ~ 766596 (-) True G347868
TU412049 lncRNA upstream 63646 810581 ~ 852436 (-) True G347773
XR_004577125.1 lncRNA upstream 79729 826664 ~ 829841 (-) True LOC117595935
XM_034299169.1 mRNA downstream 83919 652989 ~ 658898 (-) False pgam5
XM_034299168.1 mRNA downstream 83919 652989 ~ 658898 (-) True pgam5
XM_026917111.2 mRNA downstream 165381 523807 ~ 577436 (-) True LOC113528517
XM_034299346.1 mRNA downstream 226545 475494 ~ 516272 (-) True LOC113528156
XM_034299077.1 mRNA downstream 286727 440336 ~ 456090 (-) False atp8b5a
XM_026916266.2 mRNA upstream 90626 837561 ~ 844476 (-) False LOC113528030
XM_026916264.2 mRNA upstream 90626 837561 ~ 841880 (-) True LOC113528030
XM_026916267.2 mRNA upstream 90626 837561 ~ 841054 (-) False LOC113528030
XM_026916212.2 mRNA upstream 102451 849386 ~ 851691 (-) True tal2
XM_034299228.1 mRNA upstream 109845 856780 ~ 924649 (-) False LOC113527995
TU411959 other downstream 375082 364006 ~ 367735 (-) True LOC113528009
XR_004577111.1 other downstream 505545 230525 ~ 237272 (-) False LOC117595925
XR_004577112.1 other downstream 506453 230525 ~ 236364 (-) True LOC117595925
TU411849 other downstream 532175 206493 ~ 210642 (-) False LOC113528266
XR_004577138.1 other upstream 117285 864220 ~ 924623 (-) False LOC113527995
TU412323 other upstream 329798 1076733 ~ 1079139 (-) True G347960
TU412226 other upstream 410856 1157791 ~ 1410675 (-) False G347896
TU412230 other upstream 410856 1157791 ~ 1297906 (-) False G347896
TU412381 other upstream 609633 1356568 ~ 1369462 (-) False LOC113524988

Expression Profile