RNA id: XM_034298966.1


Basic Information

Item Value
RNA id XM_034298966.1
length 4088
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC113528268
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 161020 ~ 184551 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTTCCTGCTCTCTAACCGGATAACGacgtttattattatcattattattattattattatttggttattattatttggttattattattattattattattattattattattattattatttcggCCTGTGGTGCTGTAGAGTGGCGGTGTTTGGCTGCTCAGAGGGCTTTTCTTGTGGACTTGCCTCTGCTTTGAGTCAGTGAGAGCTAACAGAGCTAACAGAGCTGGTGTGTAGAAGCTCTTGCTGTGTGTCAGTGCTGGAAGGTGTGTTAGTGCTTTATTCCAGACATGTGGAGCTACACACTTCTGTTCGGGCTGCAGATTTTCACCTTTGCTGCCACTGTGTCTGGTGAACGTTCTGTAACAGCCAAACTTCATCACCCTGCTACTCTCACCTGTGTCTGGAAATGTCCTGGTTCACTCGAATGGAGTTTCAAGTTTCATACGATTGTGGCTCGGTGTGATCAGACGTCATGCAGGTCAGAGGAGAGATTTAACGTCTCTCATGATCAGTACCTGAAGGGGAATCCACATCTCACCATCACTGCAGCTGATTACAGTACGAGAGGTTTATACACGTGTCAGTGTGATGGCAAAGACGTCTGTAACGTGCGGCTCCTCATTGAGACTCAAGTGATGAGCTGTGAGATTACCCCAGGCGAGCCCATAGACGTGTACTTACCCCTCACTGACCTGGTGGAGGTGAGTTTTACTGCGAGTGATGCTGCACAACCATCAGACCTGCAGATCTGCACCGTGGACAATGAGAAGATACAGATTATAAATCCAGATTATAAAGAGAGAGCGTCTCGCATCAACACTCTTCAGATTAAAGATGGAAATGTCTCTGACAGTGGCAGCTACACAGTACGGGATGTAGTGAACAATGAGACTTTAGCCATCTTAAAGGTCCATATGAGAGaagACCAGCCAGGTTCGGACATCAGGCAGGAGGGAGGTGTACCAGCGTGTGGGATTGtactgatgctgctgctgctgctggttgTAGCTGCATTTGTGGTCCTGATGGTGATGTATGTGCGTCTGAGGAGAGAGAATCAGCAGCTCCGTGAGAAAGATGAAAGGAACGGACACGAGCTGCGCCCAATGAATGGAAATGCTAACCATGATCCAGGAGAAGAGCAGGACTGAGTACACACTGAGCTTACTGAACccacaaacactgaacactattctattataataaaatctttagaatagaatagaagagCTTTATTGTGCTGCATGATCATAGTGAAAGTAAGTTTGAATTTCCTGCTGTTACATGATGGAGAATATGTCAGTAATGTAAATATAGAGTAACGTCCTTTACAGGAAGAAGTGTGCAGTATGAGAGTGAGTGCAAGTGCTGAAACAGCAGGGTGGTGGAGCTGTAGGTCACATACACAAGTGACGGATGTTGTACAATCACAGTGAGGTAACAGTGTcggggtcagggttagggtgttAATGGTTCTCAAATCACGCTGAGCAAATTGACTTCAGACGTGTTcagtggtgtttaatgatgCGTTTCAGTCACGTCTAATTCAGCACATGCAGGGAAACGTGGTGCTTTTCTTCATAATTCAGTATTATCCGTAAGAAAGGACCAGAATAAATAACTACTGATGTGATAATCAGAGTGTAGACGAGCCACAGTGTGTAAAACTACTGATCAGGAACTACTGAAACTTCTTGTACTGACTGGTGCTAAGTGAGGACGTGAGTTTACTCCTGTTACATTCCATCCACTGACACCCCGTGCCTTATAGACTTCCCTTTAACCTTTATTACAGGTATTAAAGACCTCAGTAAGACCTtttataacacataataacTGATGCACTATATCACGCCGTGCCTTATAGACTTCCCTTTAACCTTTATTACAGGTATTAAACACCTCAGTAAGACCTTTTATAACGCATAATAACTGATGCACTATATCAGGTCACATTACCAGATTGATCTTTATCAATCTGGATCTGATCCTACAGTCATGGTACGAGGAAAGTACCCCCTCCTCCAGTTCTATGTTTTTCGTTATCAGAGTTAGTTGTTTAGTTATCAGCATTCTGAATGTTgctttactttttgggaaaaaaatgactacatattaaaatctgttgttgtttttttgtggtaacaattttttttttacaattttcaattttcagtAACAATCAATTGTTAGAGATGcgtgtgtgttattgtctgtttgtctggttgcttttatttctgaattttatgTGAGGTCGTATTATATTTCACTCTTCCTGCTTCAGCTTTACCAAAAATGCCCTCCTCAGGTGTTATTagtgtttatgtgaaatatgCAAAGTGTTTTCGCATGAAGGAGATCAGAGGAGacgcatcttaatcagagacttCGCTCTTCttataaagtgtttttatgGATAAAGTTATGAATGAaccgcatgtaaccatggttccccgagggaacgagacgctgcgtcgaaaCACTATGGGAACGCCCtcagcgtgaccacgctctgaatcacatgtgtaatcagtccaatggatgggcgagaagtcacgggcggggtgacgacccggaagcttaaaagcacaagcggtggatacagcggcagcttctgagaaatgaagcaagcgctcacagggatgccggaagtatggcactgagacgcagcgtctcgttccctcggggaaccatggttataTGCATAACCTAGAGACGTTCCCCTTTAGGAACTCGAGCTGGAAGAGCACAGCAAGGGTGAGAGAACAGAAAAGCCTTGAGTGGCTCGCATATCGAGGCCATagaacctgacacacacacagttaagcCTCTGCTGGTCGGGCTCCCGAAAGGGAGGAAGACAGAAGGCCTGGAGCACGACAGGCCGTGGTGTAGAGGAGGGAACTTTAGGAACATAACCCGCTTGAGGGTAGAGAAACGCTTTGGCCAgaccaggcgcaaagtctaaataagaGGGGGCCACTGAGGGCCCGAAGATCCCCAACTCTCTTTAGAGAGAGCCTCTAACACCACAGCCAGGTCCCACGGAGGGACACAAGATCGTACCGGAGGCCTCAGCCTCAGCacaccgcggaggaaacgtgtaactagggggtgtctgcccacagaCCAACCCTGCGGAGAATcgggcctgcaggaactccagcaccaACTGGGCAGTTAACTGGGCCGAGCTGGTGGTCTCTGCACCAAGAAGGGgaaagtttccacttcaaggcatacagtttccttgttgagggagctctggattggagaATGGTCTCATCTTTCTTTATCATCATGTTGTAAAAGTACAACAATTCAGCAGAGAAATGTGTCTATAATAAATGTAGGTGTTcattatttgtgtatattaaGCTCTGCTTAGATTTTGTGCACATTGTAATGCACTGTTCTCATTTGTTCTGTATATAATTGTTATCTCTATATCttactattatttctattagtagcagtaataaTACTGCATTTTGTCTTCACACACGTTACCTttgtaaggatttttttttaatgaaaatgtgttttttactCTGCTGAGCTCTGAGAGCTGCTTATCTACTGATGTACAGTCACTTGAATAGACACTGAAAATGTACTGAATGTGAAAATGTCTTGTTGGTTTGGATCTTTTGTAGTTTTATGTTTTTGATGGCACTGCAGATCCACCTGAGGAGTAGAAAAACCTCATTCAGAAGCTTCTAGAGgttttaatatacatatattatatatatatataaaatttatgcTCTTAATGTAACAGTATAATATATGACTATTGCATTGTTTTAATGAGAATGATtaaatcagggttgccagatttcagcAGAAAGctcaggactgtgtgtgtttagtaactgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagactacagTCTCTTTATCACGTCAGTACTCAGCTACATTCTGTCTTCTGTCCTGTGCTTTGTGTCCAAACACATTATCCAGcttactgttttcttttattaaaataaaaataaaaccatgagAAACCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411860 lncRNA downstream 19963 139214 ~ 141057 (-) False LOC117595978
TU411888 lncRNA downstream 22207 120309 ~ 138813 (-) True G347652
TU411870 lncRNA downstream 126242 17440 ~ 34778 (-) True G347634
TU411951 lncRNA upstream 144372 328914 ~ 329608 (-) True G347703
TU411952 lncRNA upstream 148700 333242 ~ 333755 (-) True G347704
TU411911 lncRNA upstream 169785 354327 ~ 355340 (-) True G347672
XR_004577162.1 lncRNA upstream 179723 364265 ~ 367739 (-) False LOC113528009
TU411979 lncRNA upstream 210825 395367 ~ 397450 (-) True G347723
XM_034299335.1 mRNA downstream 11214 118198 ~ 149806 (-) True LOC117595978
XM_034298967.1 mRNA downstream 26481 126990 ~ 134539 (-) True LOC117595912
XM_034298968.1 mRNA downstream 38359 119182 ~ 122661 (-) True LOC117595913
XM_034298969.1 mRNA downstream 44515 95456 ~ 116505 (-) True LOC117595914
XM_034298970.1 mRNA downstream 69151 86459 ~ 91869 (-) True LOC113525747
XM_034298963.1 mRNA upstream 8007 192549 ~ 201990 (-) True LOC117595911
XM_026916720.2 mRNA upstream 20938 205480 ~ 210705 (-) False LOC113528266
XM_026916719.2 mRNA upstream 20938 205480 ~ 210705 (-) True LOC113528266
XM_026916717.2 mRNA upstream 36887 221429 ~ 226704 (-) True LOC113528265
XM_026916718.2 mRNA upstream 36887 221429 ~ 226447 (-) False LOC113528265
TU411864 other downstream 35814 87567 ~ 125206 (-) True G347628
TU411852 other downstream 39909 95363 ~ 121111 (-) True G347622
TU411851 other downstream 61358 86663 ~ 99662 (-) True G347621
TU411899 other upstream 12850 197392 ~ 201961 (-) False LOC117595911
TU411849 other upstream 21951 206493 ~ 210642 (-) False LOC113528266
TU411850 other upstream 21951 206493 ~ 210642 (-) False LOC113528266
XR_004577111.1 other upstream 45983 230525 ~ 237272 (-) False LOC117595925
XR_004577112.1 other upstream 45983 230525 ~ 236364 (-) True LOC117595925

Expression Profile