RNA id: TU436775


Basic Information

Item Value
RNA id TU436775
length 809
lncRNA type sense_over
GC content 0.40
exon number 3
gene id si:dkeyp-75b4.8
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 202654 ~ 227102 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGCGCTCTCACCCAAGTTTTAAACCACTTCCTTGTTTATTCCCATCGTTTCCTGTTATACACTATAAAAGGCACATGCACTCACGCTACAAGTGTGAAGGCTTGTAGTTTGTGCTTTGTTTGTTCAGCCTTCCCCCCATCAGGTTATTCCACAGCAGATGTTGGGTAGGACACTGGGTGATGCTCCCACTGTGATTAATTGCCCGCACTGTCTTCAACAAATTACCACCAGCGTGTCTTATAAACCTGGAAATGCAGCATGGGCCATGTGCTGCCTGCTTACACTGTTTGGGCTCGTCTGTGGATGTTGCATTATTCCCTGCTGCGTGAAAGAATTCCAGGATGCGCATCATTCATGTCCGGCCTGTAACAGATTCTTAGGGATACACGTTcgctaaaacacacacgcacacacacacacagtttattacCATCATTGTATTTACATTGAAAAATGATTTGTAGCTAATTTATTCTATCCTTGGACTTAAAGCAAGCAATAACGTCATTACTGAAATAGAAATCTTTCGGATCATGATCTGTAAGATTAAACTGATAAATGTGACGTGCTCATGCATTTTGTGTGGATGCAGACAGTAGAAGCGTTTGATGTGTTAATGGGCGtagataaatgtaataaataaatttattcagtTTTCCTTTGAGATAATTAAAGTAACATGCTGGTAACAGTGGAAACTAACGTCTTATGAAACGTCTTgataaacaatacattttcctttatttaagcTTTGTGCCTACTTGTCCCTTAATTCTCCTTACAATCTGCGATTAAAGACAAAATAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436781 lncRNA downstream 25470 185834 ~ 193914 (-) True G368689
TU436777 lncRNA downstream 34738 179182 ~ 184646 (-) True G368685
TU436806 lncRNA upstream 22421 244177 ~ 244780 (-) True G368713
TU436824 lncRNA upstream 59683 281439 ~ 281903 (-) True G368725
TU436801 lncRNA upstream 63125 284881 ~ 289879 (-) False pmm2
TU437043 lncRNA upstream 356837 578593 ~ 581860 (-) True G368903
TU437049 lncRNA upstream 369496 591252 ~ 592079 (-) False rasd3
XM_026910892.2 mRNA downstream 57403 154481 ~ 161981 (-) False rnf175
XM_034300347.1 mRNA downstream 57556 154481 ~ 161828 (-) True rnf175
XM_026910856.2 mRNA downstream 89023 125530 ~ 130361 (-) True fgb
XM_026910881.2 mRNA downstream 105644 92135 ~ 113740 (-) False LOC113524573
XM_026912253.2 mRNA upstream 6692 228448 ~ 234976 (-) True pdia2
XM_034300401.1 mRNA upstream 13143 234899 ~ 244174 (-) True percc1
XM_034300280.1 mRNA upstream 40397 262153 ~ 277683 (-) True rgs11
XM_034300321.1 mRNA upstream 63107 284863 ~ 289908 (-) True pmm2
XM_026929006.2 mRNA upstream 130697 352453 ~ 408289 (-) True elfn1b
TU437316 other upstream 689797 911553 ~ 915683 (-) True G369125
TU437448 other upstream 1054265 1276021 ~ 1276813 (-) True G369242
XR_004577318.1 other upstream 1319606 1541362 ~ 1599744 (-) False nrp2a
TU437816 other upstream 1570431 1792187 ~ 1795224 (-) True G369586
XR_003403632.2 other upstream 2345001 2566757 ~ 2574471 (-) False LOC113535702

Expression Profile