RNA id: XM_034300207.1


Basic Information

Item Value
RNA id XM_034300207.1
length 759
RNA type mRNA
GC content 0.47
exon number 6
gene id si:dkeyp-75b4.8
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 202654 ~ 227102 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAAGTACACATTCTACACAGACGGTTCGAAGATAAACACACAAAGCAGTGAGAAGATCAACATGGGAGCAAGAGATAAAAGTAAAATCACCAaggaggaatgaaaaaaaaaagaagacaaaagaaaagTGTGCCGTAAATGGATATTTCTGAAGCCACTGTTTCTGCAGTCGGTTTCTCGCTTCCACCTCCCTCATATACTGAAGCTATACTGAGTCCACAGCCTTCAACACCACCTCCTACTTATGCGGAAGCAGtggGTGTCCTTCCTCTGCAGTTGGACAATGCTGCGTCTCCTTATCCTATCCTCAGCATTCCTACAGAGGTCATGCCCGTACATCACACACAGCGAGTGTTTGTTCAGCCTTCCCCCCATCAGGTTATTCCACAGCAGATGTTGGGTAGGACACTGGGTGATGCTCCCACTGTGATTAATTGCCCGCACTGTCTTCAACAAATTACCACCAGCGTGTCTTATAAACCTGGAAATGCAGCATGGGCCATGTGCTGCCTGCTTACACTGTTTGGAAGGAACGATGCAGCACTCAGAATACACAAAGCCACAGCCTGGTGCACATCACACAGCAGTTTAGTGACTCTGGACTTGACTGAGATTTGACTTGGGCTTGAGGCTCGTCTGTGGATGTTGCATTATTCCCTGCTGCGTGAAAGAATTCCAGGATGCGCATCATTCATGTCCGGCCTGTAACAGATTCTTAGGGATACACGTTcgctaaaacacacacgcacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436781 lncRNA downstream 25859 185834 ~ 193914 (-) True G368689
TU436777 lncRNA downstream 35127 179182 ~ 184646 (-) True G368685
TU436806 lncRNA upstream 17075 244177 ~ 244780 (-) True G368713
TU436824 lncRNA upstream 54337 281439 ~ 281903 (-) True G368725
TU436801 lncRNA upstream 57779 284881 ~ 289879 (-) False pmm2
TU437043 lncRNA upstream 351491 578593 ~ 581860 (-) True G368903
TU437049 lncRNA upstream 364150 591252 ~ 592079 (-) False rasd3
XM_026910892.2 mRNA downstream 57792 154481 ~ 161981 (-) False rnf175
XM_034300347.1 mRNA downstream 57945 154481 ~ 161828 (-) True rnf175
XM_026910856.2 mRNA downstream 89412 125530 ~ 130361 (-) True fgb
XM_026910881.2 mRNA downstream 106033 92135 ~ 113740 (-) False LOC113524573
XM_026912253.2 mRNA upstream 1346 228448 ~ 234976 (-) True pdia2
XM_034300401.1 mRNA upstream 7797 234899 ~ 244174 (-) True percc1
XM_034300280.1 mRNA upstream 35051 262153 ~ 277683 (-) True rgs11
XM_034300321.1 mRNA upstream 57761 284863 ~ 289908 (-) True pmm2
XM_026929006.2 mRNA upstream 125351 352453 ~ 408289 (-) True elfn1b
TU437316 other upstream 684451 911553 ~ 915683 (-) True G369125
TU437448 other upstream 1048919 1276021 ~ 1276813 (-) True G369242
XR_004577318.1 other upstream 1314260 1541362 ~ 1599744 (-) False nrp2a
TU437816 other upstream 1565085 1792187 ~ 1795224 (-) True G369586
XR_003403632.2 other upstream 2339655 2566757 ~ 2574471 (-) False LOC113535702

Expression Profile