RNA id: TU436777


Basic Information

Item Value
RNA id TU436777
length 258
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G368685
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 179182 ~ 184646 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTAAAGtctagagacagagacagacactcGTGGGTGCTCCTCAACTGGATTTCTTAATACAGTTATTACCTCTATGGTGAAGCTTTTACCAGCTGATGAAGCTGCCAGTGCACCGGCGGTGTTGTATCCTTGGAGGACGGTGTTGATGGAGTTGATTAAACTCGACTTTCCTGCTCCGATTGGGCCGTGAAGCAGAATCTTCAGCTCACGGACTTCTGCAGTGCCTGGCTGGAAATCCTTCAGTTTCCTCAACATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436781 lncRNA upstream 1188 185834 ~ 193914 (-) True G368689
TU436775 lncRNA upstream 34738 219384 ~ 221756 (-) False si:dkeyp-75b4.8
TU436806 lncRNA upstream 59531 244177 ~ 244780 (-) True G368713
TU436824 lncRNA upstream 96793 281439 ~ 281903 (-) True G368725
TU436801 lncRNA upstream 100235 284881 ~ 289879 (-) False pmm2
XM_026910892.2 mRNA downstream 17201 154481 ~ 161981 (-) False rnf175
XM_034300347.1 mRNA downstream 17354 154481 ~ 161828 (-) True rnf175
XM_026910856.2 mRNA downstream 48821 125530 ~ 130361 (-) True fgb
XM_026910880.2 mRNA downstream 65442 92135 ~ 113740 (-) False LOC113524573
XM_026910879.2 mRNA downstream 65442 92135 ~ 113740 (-) False LOC113524573
XM_034300206.1 mRNA upstream 34798 219444 ~ 227102 (-) False si:dkeyp-75b4.8
XM_034300207.1 mRNA upstream 35127 219773 ~ 227102 (-) False si:dkeyp-75b4.8
XM_026912253.2 mRNA upstream 43802 228448 ~ 234976 (-) True pdia2
XM_034300401.1 mRNA upstream 50253 234899 ~ 244174 (-) True percc1
XM_034300280.1 mRNA upstream 77507 262153 ~ 277683 (-) True rgs11
XR_004577324.1 other upstream 18008 202654 ~ 227102 (-) True si:dkeyp-75b4.8
TU437316 other upstream 726907 911553 ~ 915683 (-) True G369125
TU437448 other upstream 1091375 1276021 ~ 1276813 (-) True G369242
XR_004577318.1 other upstream 1356716 1541362 ~ 1599744 (-) False nrp2a
TU437816 other upstream 1607541 1792187 ~ 1795224 (-) True G369586

Expression Profile