RNA id: TU436801


Basic Information

Item Value
RNA id TU436801
length 1086
lncRNA type sense_over
GC content 0.39
exon number 2
gene id pmm2
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 284863 ~ 289908 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGGGAGCAGGAAGTGATTCAGGAGTCGCTGCGGGTTCCGTGGACGTGTCGATTCCTTGCATCACTTCCTGCAGCCCGGCTCGctttaactttaataataataataataataataataacagcttaTAATCTGCTTGACAGGGTTTAATATCAGAGATGACGAGCTCAGGTGTGGACACGCAGACACTTTGTCTGTTTGATGTGGACGGAATTAAACGTCACGCTTACTGGAAACGCAGCTGACTCTGAACCTGGTGCTGGTGTTCACCTCCAGTTACTCCTTTAATCAAGTTTAaatctaatctctctctctctgcacaatGCACACACGCCGCGTTTCAGGAGACCTGGCGTTGAATCCGTGTGGAATTTTCTGTTACTAAAACAGTCCACAACGTCGCCGTCTGACTTCGTGTCACATTTTAATCCCTCAAATTGTTGTTTGGTCTTTTGGACTGATTTGGAAAAAGGACACAGTCGTGATCGTGCgtccgtctcacacacacagatttatagaaataaataaagtaaatgttcTCTCACATGCCGTATAGGCCACAAAGCACACGCTTGCAGTCAtacggtttaaaaaaaaagtttttttaattagaaatataagtgtacatataaaatgaaatcCTGGACTGCAACTATGACTAAATAATCagaacatatatataaaataatcagtatattgaataatcagtgtataaatataataataatgagtgtgtgtagatgtgattatggggtaatgtgtgtgtcagattttATCAGGTTTgggattttaataaatatattcaggaATGTTCTTTTGGCACGGAATACGTTGAGGACCTGGGGGTTTATGGGTttgggctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcactgtagAACTCACTACAGCGGTGTGTCATTTTCTTGATGTCACGTGGAAGAGGAATCGAGTCGTTTGCTGCACGTCTGTTGTTGATTACTGTAagagtaaatgaatgaaacagtgTGATTTGTATTGAATTAAAgttattgttcttttttattttttcccctcaattaAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436824 lncRNA downstream 2978 281439 ~ 281903 (-) True G368725
TU436806 lncRNA downstream 40101 244177 ~ 244780 (-) True G368713
TU436775 lncRNA downstream 63125 219384 ~ 221756 (-) False si:dkeyp-75b4.8
TU436781 lncRNA downstream 90967 185834 ~ 193914 (-) True G368689
TU436777 lncRNA downstream 100235 179182 ~ 184646 (-) True G368685
TU437043 lncRNA upstream 288714 578593 ~ 581860 (-) True G368903
TU437049 lncRNA upstream 301373 591252 ~ 592079 (-) False rasd3
TU437060 lncRNA upstream 381761 671640 ~ 673030 (-) True G368912
TU437062 lncRNA upstream 381761 671640 ~ 673030 (-) False G368912
TU437096 lncRNA upstream 411205 701084 ~ 701288 (-) True G368944
XM_034300280.1 mRNA downstream 7198 262153 ~ 277683 (-) True rgs11
XM_034300401.1 mRNA downstream 40707 234899 ~ 244174 (-) True percc1
XM_026912253.2 mRNA downstream 49905 228448 ~ 234976 (-) True pdia2
XM_034300206.1 mRNA downstream 57779 219444 ~ 227102 (-) False si:dkeyp-75b4.8
XM_026929006.2 mRNA upstream 62574 352453 ~ 408289 (-) True elfn1b
XM_026929184.2 mRNA upstream 228725 518604 ~ 525065 (-) True uncx4.1
XM_034299924.1 mRNA upstream 254379 544258 ~ 558212 (-) False chtf18
XM_034299922.1 mRNA upstream 254379 544258 ~ 558212 (-) False chtf18
XM_034299921.1 mRNA upstream 254379 544258 ~ 558212 (-) False chtf18
XR_004577324.1 other downstream 57779 202654 ~ 227102 (-) True si:dkeyp-75b4.8
TU437316 other upstream 621674 911553 ~ 915683 (-) True G369125
TU437448 other upstream 986142 1276021 ~ 1276813 (-) True G369242
XR_004577318.1 other upstream 1251483 1541362 ~ 1599744 (-) False nrp2a
TU437816 other upstream 1502308 1792187 ~ 1795224 (-) True G369586
XR_003403632.2 other upstream 2276878 2566757 ~ 2574471 (-) False LOC113535702

Expression Profile