RNA id: XM_034300321.1


Basic Information

Item Value
RNA id XM_034300321.1
length 1884
RNA type mRNA
GC content 0.44
exon number 8
gene id pmm2
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 284863 ~ 289908 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGGAAGCTCACTATGAAGTGCAGTAATGTAGGGAGCAGGAAGTGATTCAGGAGTCGCTGCGGGTTCCGTGGACGTGTCGATTCCTTGCATCACTTCCTGCAGCCCGGCTCGctttaactttaataataataataataataataataacagcttaTAATCTGCTTGACAGGGTTTAATATCAGAGATGACGAGCTCAGGTGTGGACACGCAGACACTTTGTCTGTTTGATGTGGACGGAACTTTAACAGCAGCtcgacagagagccACTCCACACATGCAGGAGTTCCTGAGTAAACTGAAACAGCGGGTACGAGTCGGAGTCGTCGGAGGTTCAGATCTGAATAAGATCAAGGAGCAGCTGGGTGAAGACGtaatCGAGCGAGTGGATTACGTTTTCGCTGAGAACGGTTTGGTGGCCTACAGATTCGGGCAGCTCCATTCTGTAcagAGTATTCAGGCGTATCTCGGGGAGGAGATTTTACAGGATTTCATTAACTTCTGTTTAGACTACATGGCCAAGATCAAACTGCCCAAGAAAAGAGGCACGTTTGTCGAGTTCAGGAACGGGATGCTGAACATCTCTCCTATCGGCCGGAGCTGCAGTCAGCAGGAGCGACTCGAGTTCTTCGAGCTGGATAAGAAAGAAAAGATCCGAGAGAAATTTGTGGCCGTTCTGAAAGAACAGTTCCGGGGGAGAGGACTGTCTTTCTCCAtcggagggCAGATCAGCTTCGACGTGTTTCCAGAAGGTTGGGATAAGCGTTATTGTTTGGGAATCGTAGAGAAGGACGTGTATCAGACCATCTATTTCTTCGGGGATAAAACTAAACCGGGAGGAAACGATTACGAGATCTACACAGACCCCCGAACCATCGGCCACGAGGTCACGTCACCCGAAGACACGCAGCGGATCTGCGAGGAGCTCTTCTTCAGCTGAGTTCTCTCCGAGTTCCTCCGCCGCACGAAGGAAGCGCGCTGAGGCTTCGTGACTTAAACGTCACGCTTACTGGAAACGCAGCTGACTCTGAACCTGGTGCTGGTGTTCACCTCCAGTTACTCCTTTAATCAAGTTTAaatctaatctctctctctctgcacaatGCACACACGCCGCGTTTCAGGAGACCTGGCGTTGAATCCGTGTGGAATTTTCTGTTACTAAAACAGTCCACAACGTCGCCGTCTGACTTCGTGTCACATTTTAATCCCTCAAATTGTTGTTTGGTCTTTTGGACTGATTTGGAAAAAGGACACAGTCGTGATCGTGCgtccgtctcacacacacagatttatagaaataaataaagtaaatgttcTCTCACATGCCGTATAGGCCACAAAGCACACGCTTGCAGTCAtacggtttaaaaaaaaagtttttttaattagaaatataagtgtacatataaaatgaaatcCTGGACTGCAACTATGACTAAATAATCagaacatatatataaaataatcagtatattgaataatcagtgtataaatataataataatgagtgtgtgtagatgtgattatggggtaatgtgtgtgtcagattttATCAGGTTTgggattttaataaatatattcaggaATGTTCTTTTGGCACGGAATACGTTGAGGACCTGGGGGTTTATGGGTttgggctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcactgtagAACTCACTACAGCGGTGTGTCATTTTCTTGATGTCACGTGGAAGAGGAATCGAGTCGTTTGCTGCACGTCTGTTGTTGATTACTGTAagagtaaatgaatgaaacagtgTGATTTGTATTGAATTAAAgttattgttcttttttattttttcccctcaattaAATTTTCAGGTGATAAAACTCA

Function

GO:

id name namespace
GO:0019307 mannose biosynthetic process biological_process
GO:0006487 protein N-linked glycosylation biological_process
GO:0090171 chondrocyte morphogenesis biological_process
GO:0022008 neurogenesis biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004615 phosphomannomutase activity molecular_function

KEGG:

id description
K17497 PMM; phosphomannomutase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436824 lncRNA downstream 2960 281439 ~ 281903 (-) True G368725
TU436806 lncRNA downstream 40083 244177 ~ 244780 (-) True G368713
TU436775 lncRNA downstream 63107 219384 ~ 221756 (-) False si:dkeyp-75b4.8
TU436781 lncRNA downstream 90949 185834 ~ 193914 (-) True G368689
TU436777 lncRNA downstream 100217 179182 ~ 184646 (-) True G368685
TU437043 lncRNA upstream 288685 578593 ~ 581860 (-) True G368903
TU437049 lncRNA upstream 301344 591252 ~ 592079 (-) False rasd3
TU437060 lncRNA upstream 381732 671640 ~ 673030 (-) True G368912
TU437062 lncRNA upstream 381732 671640 ~ 673030 (-) False G368912
TU437096 lncRNA upstream 411176 701084 ~ 701288 (-) True G368944
XM_034300280.1 mRNA downstream 7180 262153 ~ 277683 (-) True rgs11
XM_034300401.1 mRNA downstream 40689 234899 ~ 244174 (-) True percc1
XM_026912253.2 mRNA downstream 49887 228448 ~ 234976 (-) True pdia2
XM_034300206.1 mRNA downstream 57761 219444 ~ 227102 (-) False si:dkeyp-75b4.8
XM_034300207.1 mRNA downstream 57761 219773 ~ 227102 (-) False si:dkeyp-75b4.8
XM_026929006.2 mRNA upstream 62545 352453 ~ 408289 (-) True elfn1b
XM_026929184.2 mRNA upstream 228696 518604 ~ 525065 (-) True uncx4.1
XM_034299924.1 mRNA upstream 254350 544258 ~ 558212 (-) False chtf18
XM_034299922.1 mRNA upstream 254350 544258 ~ 558212 (-) False chtf18
XM_034299921.1 mRNA upstream 254350 544258 ~ 558212 (-) False chtf18
XR_004577324.1 other downstream 57761 202654 ~ 227102 (-) True si:dkeyp-75b4.8
TU437316 other upstream 621645 911553 ~ 915683 (-) True G369125
TU437448 other upstream 986113 1276021 ~ 1276813 (-) True G369242
XR_004577318.1 other upstream 1251454 1541362 ~ 1599744 (-) False nrp2a
TU437816 other upstream 1502279 1792187 ~ 1795224 (-) True G369586
XR_003403632.2 other upstream 2276849 2566757 ~ 2574471 (-) False LOC113535702

Expression Profile