RNA id: XM_026929185.2


Basic Information

Item Value
RNA id XM_026929185.2
length 1460
RNA type mRNA
GC content 0.53
exon number 1
gene id rasd3
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 591136 ~ 592595 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAGCGCACGGCGTGGTGGCGTGATGACGTCATCGTCGCTGTCGGTCCCGGAGCGGCGCACGGCGCGGATCGTGTTCCTGGGCGCCGCGGGTGTGGGAAAGACGGCGCTGATCGCGCGCTTCCTGCATGACCGCTTCGAGCCGCGGCACGCGCGCACCGTGGAGGAGCTGCACGCGCTCGAGTGCGACCTGGACGGCGCCGCGCGCCTGCGCCTGGAGATCCTGGACACGAGCGGCAGCTACGCGTTCCCGGCCATGCGCGCGCTGCGCATTCGCACCGGCGACGCCTTCGCGCTCGTGTACGCGGCGCGTGATCGCGGCTCGCTGGAGGAGGCGCGGCGCCTGCGGGACGAGATCCTGGAGATCAAGGGCGACGCGTTCGACGCCATCACGGTGGTGGAGAGCAAGGCGGACCTGGCGAGCCGCAGCCGCGCCGAGAGCGCGCGCACCATGCGCGCCGTGGAGGAGGAGTGGCGCGCGGGGTTCGTGAGCGCGTCCGCGCGCACCGGCGAGAACGTCGCCGCGGTGTTCCGAGAGCTGCTCGCGCGAGCCGACCTGCCCAGCCGCGTGAGCCCGGCACTGCGCAGGCGCAGACAGACCTGCGGGAGGGACTGCGGCGATGAGAAAGCCAACATGAGGAAAAACAGCAGCTGCGTTCTGTCTTAATCAAAAACCTCCACCGGTAACCTGCACTAACGCCTCACGCTGACGCACTTCCGGTGGCGCAGAACTCagtctgacctctgacctctgacctttctaCACCACTGACTCTTTATGTGCCAGTGTTACAGAACTGCAGAAAAGTAAATGATGTGTATGTGAAAGAGTAAACATACTTTTATACCTTTCTGAAGTTTCTGCTGGTTTATTTTCAGCATcataaactcctccgtcctgaagaaaCGCACAgctacagcttcacctctgactgttacgaagcgctgacactggagactccttccttacatgttacatccttacagaaatcttcaccacatcagtgatTGTTTTAgttacaggaaatgaatcagtactttctgaccaatcagacatGAGAATTCAGTGTATCTGATACTTACGATGCATATTACAATctttgtacatattttaaaagCCTGTAATTACACACATAACTGTAATTGATATTTTTATCGTATTTACAGCGAGAGAAATCCTTCTGTTCTCGGCGAATAAACCATTCGTGTGTGATGTGAAAGTTGGTGGCGTGGACATTTACGCCAAACTGGAGCAACTACActttatcaaaaatatattagactttaaatctgtgtatctatttctgtatttctctgaactttaattaaagctgttttgtgttcGTTATTGTCATTacgaattaattaataacaatttaattaaagaaatgttgATGGACATCAGCACGATGGTGTCATTTTGTATGAAAATGTCATTTGTTGAAATGAAGCTGAAGTAAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU437043 lncRNA downstream 9276 578593 ~ 581860 (-) True G368903
TU436801 lncRNA downstream 301257 284881 ~ 289879 (-) False pmm2
TU436824 lncRNA downstream 309233 281439 ~ 281903 (-) True G368725
TU436806 lncRNA downstream 346356 244177 ~ 244780 (-) True G368713
TU436775 lncRNA downstream 369380 219384 ~ 221756 (-) False si:dkeyp-75b4.8
TU437060 lncRNA upstream 79045 671640 ~ 673030 (-) True G368912
TU437062 lncRNA upstream 79045 671640 ~ 673030 (-) False G368912
TU437096 lncRNA upstream 108489 701084 ~ 701288 (-) True G368944
TU437066 lncRNA upstream 109021 701616 ~ 701979 (-) False prkcba
TU437270 lncRNA upstream 277292 869887 ~ 948803 (-) False zgc:77849
XM_026929181.2 mRNA downstream 1740 582498 ~ 589396 (-) True plk1
XM_034299924.1 mRNA downstream 32924 544258 ~ 558212 (-) False chtf18
XM_034299922.1 mRNA downstream 32924 544258 ~ 558212 (-) False chtf18
XM_034299921.1 mRNA downstream 32924 544258 ~ 558212 (-) False chtf18
XM_034299920.1 mRNA downstream 32924 544258 ~ 558212 (-) True chtf18
XM_034300403.1 mRNA upstream 52881 645476 ~ 651428 (-) True LOC113535779
XM_034300404.1 mRNA upstream 60858 653453 ~ 702345 (-) True prkcba
XM_026929176.2 mRNA upstream 110604 703199 ~ 711315 (-) True tlr2
XM_034300162.1 mRNA upstream 110604 703199 ~ 708240 (-) False tlr2
XM_026928986.2 mRNA upstream 277164 869759 ~ 879270 (-) True zgc:77849
XR_004577324.1 other downstream 364034 202654 ~ 227102 (-) True si:dkeyp-75b4.8
TU437316 other upstream 318958 911553 ~ 915683 (-) True G369125
TU437448 other upstream 683426 1276021 ~ 1276813 (-) True G369242
XR_004577318.1 other upstream 948767 1541362 ~ 1599744 (-) False nrp2a
TU437816 other upstream 1199592 1792187 ~ 1795224 (-) True G369586
XR_003403632.2 other upstream 1974162 2566757 ~ 2574471 (-) False LOC113535702

Expression Profile