RNA id: TU437062


Basic Information

Item Value
RNA id TU437062
length 1319
lncRNA type intronic
GC content 0.35
exon number 2
gene id G368912
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 671640 ~ 673030 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAAACCGGATACAACCGAAATTTGTTCGCAGGAGCATTTAGACAATTCACGAAAGTTCGGAAAAACTTCGTATCCTACgagaatttgtgtaaatttacgtatAATTGACGTGAACCTCGATTGCCTTCAAATCATTGCTGAAAATTGATTGCTGCCATTTTATATACAGAACATGCtatcaagtttaaatcacttgCTAATTTTGAGTCGTTTTGTATTAATAACTAatgacaaataagactagccgttcaaaagtaatggcaccctgtaACAGGAGGAGGAGTTAACACACGTCGGTGGaagcgctgcagtggctgagctgcgttactggaagatttaggaGGCGCTGTACTATTTCGTAGCCATTTTGTCAATTTCAGCTCTTATTATGGAGTTTtatgggcgtggctaaatgtaaatgtgccaTGAACACAGCTGATAAACGCTGATTAGTTGtatattatcatttatcataTTATCAAAGACAATCAGTGAAAAATATAGCAGGGATTTTTACCTCACTTTGTCTGTGAAACATTATATAACACGACTTCaataaaagattgataaatgaggcccattatgaacatgtatatacacaaaaGTATGCTGTTTCTTTATTTCGTCGTATATCTGTGCCAAATCTAAGAGTTCTGTGTAACGTACTAGGTTTACATCAGTGGTTCCTGAACCAGTCCTCAGGGACGgggtgtttttagttttgtttagttttgtttttttgctttccaTCTCTCAGCACACGTGTATCAggtatacagtgtttttttttttttcgggggCGGGGGGAATCACTGCTTCCTGTCAATCAACGTGGTGTGAACATCAGACATCATGCATGAACCTGGATACACACTGTAACTGAGGACTGCAACTCCCTCCTTACTCgagaattttttaatatttttgactCCCCAAagtggtattattattattattattattgatattatgtTGTTAAAGATTACATATCTTTTGTCATTAGTCCACCAAATCTGTGTAGtacattattataattcatATCAGAAAACCCGAAGCCCTCAAAGTATTTGAATGAGAGTAATGCAATCCACTGTGAAGAGATcggtacattttacattttaatatatatatatatataatagtaaaTCTATGaataatttttgtttcttttttctcacatAAACTGAAACATCCTCGCCATACAACACATTGTTATTGTGCGATAATAATGTGTTGCTTATTGAGTTTTCATTACCCTTTACCGAAAATCAGTCTTGCTGAGTGACCAGCTAACAGTGAACAAAATAAAGGCATGGAt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU437049 lncRNA downstream 79561 591252 ~ 592079 (-) False rasd3
TU437043 lncRNA downstream 89780 578593 ~ 581860 (-) True G368903
TU436801 lncRNA downstream 381761 284881 ~ 289879 (-) False pmm2
TU436824 lncRNA downstream 389737 281439 ~ 281903 (-) True G368725
TU436806 lncRNA downstream 426860 244177 ~ 244780 (-) True G368713
TU437096 lncRNA upstream 28054 701084 ~ 701288 (-) True G368944
TU437066 lncRNA upstream 28586 701616 ~ 701979 (-) False prkcba
TU437270 lncRNA upstream 196857 869887 ~ 948803 (-) False zgc:77849
TU437326 lncRNA upstream 198559 871589 ~ 875203 (-) True G369130
TU437443 lncRNA upstream 593676 1266706 ~ 1270364 (-) True LOC117596193
XM_034300403.1 mRNA downstream 20212 645476 ~ 651428 (-) True LOC113535779
XM_026929185.2 mRNA downstream 79045 591136 ~ 592595 (-) True rasd3
XM_026929181.2 mRNA downstream 82244 582498 ~ 589396 (-) True plk1
XM_034299921.1 mRNA downstream 113428 544258 ~ 558212 (-) False chtf18
XM_026929176.2 mRNA upstream 30169 703199 ~ 711315 (-) True tlr2
XM_034300162.1 mRNA upstream 30169 703199 ~ 708240 (-) False tlr2
XM_026928986.2 mRNA upstream 196729 869759 ~ 879270 (-) True zgc:77849
XM_026928831.2 mRNA upstream 224194 897224 ~ 902489 (-) True fscn1b
XM_026929344.2 mRNA upstream 290825 963855 ~ 969617 (-) True smcr8b
XR_004577324.1 other downstream 444538 202654 ~ 227102 (-) True si:dkeyp-75b4.8
TU437316 other upstream 238523 911553 ~ 915683 (-) True G369125
TU437448 other upstream 602991 1276021 ~ 1276813 (-) True G369242
XR_004577318.1 other upstream 868332 1541362 ~ 1599744 (-) False nrp2a
TU437816 other upstream 1119157 1792187 ~ 1795224 (-) True G369586
XR_003403632.2 other upstream 1893727 2566757 ~ 2574471 (-) False LOC113535702

Expression Profile