RNA id: TU437066


Basic Information

Item Value
RNA id TU437066
length 364
lncRNA type sense_over
GC content 0.59
exon number 1
gene id prkcba
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 653453 ~ 702345 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGTTCCGGAGCAGCGTAGCTGCGCGCCGCCTTCGACGGGAGATTTTCGGGGCATCGAGAATCACATCTcggcctgtctctctctccctctctctctctccctctctctccctctcttttttttttttttaaagtattccGGAGGACATGGCGGACCCAGGAGCGGACGGCGATGCGGGGGGCGCGCGCGGTTTCGCGCGACAGGGCGCGCTGCGGCAGAAGAACGTGCACGAAGTGAAGGACCACAAGTTCATCGCGCGCTTCTTCAAGCAGCCCACCTTCTGCAGCCACTGCACCGACTTCATCTGgtgagccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU437096 lncRNA downstream 328 701084 ~ 701288 (-) True G368944
TU437060 lncRNA downstream 28586 671640 ~ 673030 (-) True G368912
TU437062 lncRNA downstream 28586 671640 ~ 673030 (-) False G368912
TU437049 lncRNA downstream 109537 591252 ~ 592079 (-) False rasd3
TU437043 lncRNA downstream 119756 578593 ~ 581860 (-) True G368903
TU437270 lncRNA upstream 167908 869887 ~ 948803 (-) False zgc:77849
TU437326 lncRNA upstream 169610 871589 ~ 875203 (-) True G369130
TU437443 lncRNA upstream 564727 1266706 ~ 1270364 (-) True LOC117596193
XR_004577363.1 lncRNA upstream 565102 1267081 ~ 1270425 (-) False LOC117596193
TU437449 lncRNA upstream 575094 1277073 ~ 1277650 (-) True G369243
XM_034300403.1 mRNA downstream 50188 645476 ~ 651428 (-) True LOC113535779
XM_026929185.2 mRNA downstream 109021 591136 ~ 592595 (-) True rasd3
XM_026929181.2 mRNA downstream 112220 582498 ~ 589396 (-) True plk1
XM_034299921.1 mRNA downstream 143404 544258 ~ 558212 (-) False chtf18
XM_026929176.2 mRNA upstream 1220 703199 ~ 711315 (-) True tlr2
XM_034300162.1 mRNA upstream 1220 703199 ~ 708240 (-) False tlr2
XM_026928986.2 mRNA upstream 167780 869759 ~ 879270 (-) True zgc:77849
XM_026928831.2 mRNA upstream 195245 897224 ~ 902489 (-) True fscn1b
XM_026929344.2 mRNA upstream 261876 963855 ~ 969617 (-) True smcr8b
XR_004577324.1 other downstream 474514 202654 ~ 227102 (-) True si:dkeyp-75b4.8
TU437316 other upstream 209574 911553 ~ 915683 (-) True G369125
TU437448 other upstream 574042 1276021 ~ 1276813 (-) True G369242
XR_004577318.1 other upstream 839383 1541362 ~ 1599744 (-) False nrp2a
TU437816 other upstream 1090208 1792187 ~ 1795224 (-) True G369586
XR_003403632.2 other upstream 1864778 2566757 ~ 2574471 (-) False LOC113535702

Expression Profile