RNA id: TU437512


Basic Information

Item Value
RNA id TU437512
length 3695
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G369297
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 1370134 ~ 1396598 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcacTGTCTCCATTATGAGGGAAAACACTCCTGCATGGCTGTTGCTAAGCCAGATCTCCAAAAGTTACACCACAAACACTAGAAgctaaaattaaacattcaaCCATACTAAGCACGTCTATCCTTCCTGACTGGTGGCTTATTGGCTTGactatattatgtatatatttatgtaccATACTGTGTTGTAacgtctctctcttttttccattgCAGAATTCTCCGTGGAAAGCTATCCTTCATCTTACCACTGAGACACCGCGTGTAGACGCATGAAGCTACCACATAAGATCTCCAAGAGCACTCTTGACACGTCCACTATAGACTTTAGAGTCTATAGAAACAAGTCTCTAGTACACTGAAAATTCTTCCAAGCATGCTTCAAGGCAGTGACTTTTCTTGAACAAGGTCTAAACAAACTTcaccagaaaataaataaatactttacagaaatctctttccatatattttttccatattaTGTTCACCTATACCTTGTTTCCTCTCACTTAGTTCCTTTTTCTAGTCTAAATTCTCATCGTTTGTGAACCTATCTGAcctcttttgttatttttttgtactCTGTCTGTCCATTTCCTGATTATAGATTTTCCCTCTGTGTACTTGGCTGCCTTTGTTTTGTCTACACTATGGTTAATAATTACTGGATTGCCCTCGAtaataaaaaatgctgaaatgcaTGTGTCCTGTCAATGTGACACTCAGCAATTTCAAGAAGCCTCTCCTGAAGCTGAACCAAGGTCCTCAATTTGACACGACATCCTCTGGCAGTCCTACCTTCTGATACTTGGAAGTCTGTGACAAAGTTCATCATGGCCCGAACTCTAGCACTGTTGCTTGTCAAAGGACAGGAAGTCAACTGGCAGTGCAAGGCTCTACTGACAGCATGCTCGCTGTAGACACTTTTCATAGCAAATGCTTTGAATTAGCCGCATTAACTGACTTGGCCTTGTTATTCAGCTAACAGGATGTTTAGTAACTTGTTTGGCATTACAGAAAACACCATTCCTGTAATCTAAGCACAATCTGTAAATTTGTTACATTGCTCACACAACTTCACATCGTGGAAATGTTAGCATTAATGTTGCAGCAACATTGTAGGAACATACTTTAAACGTTATTTCTTCAGAACACCCAAAAAAGCCATGGCAGAAATCATTCTGCTAGCTTAAAATTGTTAGCTGGGTGCATCATTCTGTCCATTGTGGAACGATCCACAGAAGATGGtgaatattttcaaataatctCTAATAAACCTACTAGgaacaaaaaagacattttaattgttatataaaaacatCAGGGCTAAATTAAGTACATGTAGTTTGTTTTAGACAATTTTActtaaaatggttttatttaaataagtataagtaaggaataaagcacttgcagtaagttagttcctattatcacttatgttataaaaagcactgacactggagactccttccatgaatgttaaatacatctccttacagtaaaccacaccatatcaatgattatttttctttgttaagtaaaaaaaaacattcttaattctattattattaaccttagATTATGTATATCTTGTGCGTCATTTGAACACGAGCTATGTTAAAGCAACTTGCTATTATAGAAAACtgatcaaccaatcagaatcgaggaTTCAACAGAGGTGTGGTATGAATACTAGTGGTTCATACATTATTGATGAGATGatggtgtcagtgtgtgttgttaaaTAGTTCAGCACTTTTGCATCCTTGCCACCTGGCTTCTGTCACTCAATGcgtgtctggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcggtgtgtatGCGCGGATTAGCCATAGTAAGCAGCAAGTGTATTCCTCCCACATCTCCATCTTCGCTCATTCATAACCTGCTCCAAATCCATGGTGCATTCTGTAAAATTCCTgttgcaaaaacattttgaagGAAACTACATTCTTTGTATCgtgaaaaaccaaaaacaacgAAAGAATCCAGTGAAAAGTCCGGCTTGTGCAGGTGAATAACGAGGAGTTTCCAACTCTCTGGTTTAACAGAGTCTAGCTACACAAATCTGGAAGCTTCCTTAAGCATAATTCTAGTTTATCAGTTCAGCAGCCGAGCCACAGACTGTCCCCGTAAACACacgagcacaaacacacagacaggctTTGtggggaaaagagaaaaagcagagGATAAATTATCCTGAGTAACACTGCGGATATTGATTTTGACCTCCACTTCATGTTTTGGCTCAATGGCCACCTTGTTAAATTCCTAATTTAGCACTATAGCAAACAAAGGAAGGGGAGAGGAAGCGAGAAAGACAGAGGCATACTACTATGTAGtgaaagatagaaaaaaaaaaaagcttaaacattatacaaATCAAGCCTCAGGTTCAAATTTGTAATCAAAGCCTGCAGTGCAGCGCTCAGAGAAGGtgtcagaaaaatgttttaaaggagTCATCAGTGGCAAGATCAAAAATATCATCCTAGGATACTGAAATGCAACTTACCTTGGATTAAAGGGCTTCAGCCAATCAGGAAGAGCCAAATCTGTAAACAAGGAACATCAAATAAATGATTACATAAGACAAAGCGCTGAAAATCCAGTAGGACCTGGAGTCTAGAGTTGCTCCAGGAAGGCTGTTAAAGCTTCAGGGAGAGAGTTTATCATCAGATCCCTTTAGCATAAGGGCCAGATAAACAAATTCTCATCACTGCATTCAACAGGCAGGAAGACGCACAAACTGTACCATTTATAATCCTTACTTCTGCAGTGTAAGACGACTGCAAAGCAAATATCAAGAAACGTAGGaacattttaaagctgaaaCGTTCCATATTTGAGAAACGAACCTGACAAACCTGAAGAAAAGTGATGCATTAATGCAGTAAGGTTGTCACATCTGGACAtaccacgtgtgtgtgtgtgtgtgtgtgtgtgagagaaatcCGGCCCAATATTAAACTCACCTTCTGCACAGCTGAAGAGGAGTCTCTGATATTCCTGCGACTTCACATCCTGATtacaaacaaagacaaaacgATTCATTTCCAACAGctgtattaaacacacactgtagtttaaattcatttaatgaACCTCAGAGAGTGAATTATAAATCAGGCACTGCTGAGCAGCGCTCATACGAGGTGTCAGAAAAATACAAAGGAGTCATCAGCAGttcagaaatgtatttaaaaatatataaatatacaaggTTTGTACCTCAAGAACTCAAACGTGGTCCATTAGAGTCCTGCTTTCTCCACTCATATTGCTACACTTCATGGACAGCTCAAATTCACCGTCCAATCAGAGGACTGCTTCATGTTTGGGAACCAATCACAACGCAGAAGGCGGGATCATGTGTTACTCCAGTCGGCCAAGCCATGTGAGCCTAGATTTagtcaaagaaaaagaaaaaaaaaaaaaaaaacagaacatttttaaCGTTTGCATctttattccacagcactgtttaattcttCACTGaatttcaggaaaataatcataatcaacaacagggtggcaATATTTCTTATCCTTaattattacactgtaaatTTTTATTACAGATCATTTAACATCCTGACTAcaagctaaagaaaaaaaaaaaaaaaaacaagaataaaaacacactagGTGAGAAATAACATCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU437449 lncRNA downstream 92484 1277073 ~ 1277650 (-) True G369243
XR_004577363.1 lncRNA downstream 99709 1267081 ~ 1270425 (-) False LOC117596193
TU437443 lncRNA downstream 99770 1266706 ~ 1270364 (-) True LOC117596193
TU437270 lncRNA downstream 421331 869887 ~ 948803 (-) False zgc:77849
TU437520 lncRNA upstream 6 1396604 ~ 1396905 (-) True G369305
TU437731 lncRNA upstream 96101 1492699 ~ 1574665 (-) True G369506
TU437748 lncRNA upstream 141479 1538077 ~ 1588650 (-) True G369523
TU437747 lncRNA upstream 144892 1541490 ~ 1611666 (-) False nrp2a
TU437818 lncRNA upstream 379721 1776319 ~ 1795224 (-) False G369586
XM_026928712.2 mRNA downstream 4228 1355723 ~ 1365906 (-) True LOC113535431
XM_034300143.1 mRNA downstream 124093 1204764 ~ 1246041 (-) True slc5a10
XM_034300142.1 mRNA downstream 179586 1167628 ~ 1190548 (-) True LOC113535776
XM_026928797.2 mRNA downstream 256535 1052390 ~ 1113599 (-) True cacna1hb
XM_034299982.1 mRNA downstream 344113 987755 ~ 1026021 (-) True myo15ab
XM_034300032.1 mRNA upstream 115723 1512321 ~ 1518371 (-) False en1b
XM_034300031.1 mRNA upstream 115723 1512321 ~ 1518371 (-) True en1b
XM_034300164.1 mRNA upstream 141855 1538453 ~ 1599742 (-) False nrp2a
XM_034300165.1 mRNA upstream 144764 1541362 ~ 1599744 (-) True nrp2a
XM_034300163.1 mRNA upstream 222222 1618820 ~ 1738935 (-) True pard3ba
TU437448 other downstream 93321 1276021 ~ 1276813 (-) True G369242
TU437316 other downstream 454451 911553 ~ 915683 (-) True G369125
XR_004577324.1 other downstream 1143032 202654 ~ 227102 (-) True si:dkeyp-75b4.8
XR_004577318.1 other upstream 144764 1541362 ~ 1599744 (-) False nrp2a
TU437816 other upstream 395589 1792187 ~ 1795224 (-) True G369586
XR_003403632.2 other upstream 1170159 2566757 ~ 2574471 (-) False LOC113535702
TU438365 other upstream 1446614 2843212 ~ 2853211 (-) True LOC117596167
XR_003403643.2 other upstream 3060837 4457435 ~ 4457541 (-) True LOC113535829

Expression Profile