RNA id: TU440608


Basic Information

Item Value
RNA id TU440608
length 4017
lncRNA type intronic
GC content 0.40
exon number 2
gene id G371929
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 7410981 ~ 7415018 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACCATTCTGCCATTTCTCTCCTGCTGTTCCAATCTGAAGCCACGCTGAACTCGGACTGAGTCAGGCATGTGCTTTCAGTCTCACAGCGTTTTTGAAAAGCCTGGAAGGTAAATAATATTTCTGATAAACCGTTCAATGAGTCAACTTGAGTCGACCCATTAAAATCAGCTTCTGACATCAAATTGATAATCCACAAACCATCCACAAACCAAGCATGTTTATAGAGTTGACTTGCTTTGTTATGATCTTTTGCTTGACTTGCTCAGAGTTCTCATATATCTAGATGTCATTGCTGAAGGACTTTGTGTCTTTCTGCTGATTTTGTAGTTCGAAGACTTTGTTTGGGGGAAATGGAAAGGAAAGTAAGTTACAAATAagtagtgtgtgtttgagcatgGCTGCGCTTGAATGCAAGCCTGTGTGTAGAGTACGTTTATGTGTGTTACGTGTTTGGGAGCTGTTAACACTGTTTGCTGAACATACGAACATCCATtccagagcttttttttttttctgcagtggGAAGCATTATGTCTGCCACCTGGTCAGGCCAGAGACACCACTATGACAATCCAACACCAACCACAAAGGAGATAAACCACGATAGCATGGCCTCCAGCATGAGATAACACATCAAAGCCCTCCAACCCCTCATGAAAGAAAGAGTGTAATTGTAATTGCAGTGCATCTCGagttctctcttttctctttttttagacCTCGATTAATATAATAACAAGTTGTTGTTATGCAGCCGCACTGTCAGGGCGGCTATTGAAAAGATGCAGAACATCGTGGTATGTGCTTGGAAAGCTGGAGTCAACAAAGTCCTTGACAACattgttttggattgttttgaTAATTTGGCATTATTATGGGTGTTTTGAATCAAGTTGGAACGCACAAGCAAAAGTGGGTTTAGTAAAAGGTGTCAACAGTGGATCAGAAATACcatgcatttttaaagcttttcaaCCTTACACTCTTAAGGAAAAAAGGGTTCTCAAGGGTTTGTTGAATAATTAATGATTCATAGCTTTTGACCGAGCGCTCTGACAGAGAAAAGTTTTTTTAGGGCTCTGTTTTACACGTAAGGCTTTCTACAGAAGCAAAGTATgagcatttttattaatttgcaaAACCTGACTTGTGCACAAAGTTCTGAATGGTTATAATGCATTCGTTTCATATTAcagaattacagtaattatgaGATGAAGGCTTGGAGATTCTTCTCGATGCTGTTCATGTCCTCAAACTTGGAAATGAGACGCTTTTATGGAAGCGCACGCAACATGTTAAGGTAGAAAACTAAATTATATGAGTTAAAATGTAGccaatgaaagaaaatgattaaatgaaagGAATTTCCTGATGGGAATGGTGCTAGACATATAGAGTTAAATTCTGCCTACTGATTACTTCAGCTGCGGAGGCCACTGTCATTGTTTCATGTTTCCCAACTGGGAATTATGAGACACTTTTACCAACGTTTTTTTTCACAAGTCAAAAGTTCGTAATTACTGCAATTCCTACATGACGTGATTCAGCAGTCAAAtcttttcattaattttcaaCATTCATTGAAAATCCTTTCATCTGTTTTAAGTCCTTTAGAATTTCTTGATTGAGCTGAAAAAAAGCAGATGGTTAGGactggaaaaaagtggaagacAGTGCAAGTAAGCCACGCAAGAAACGTGCTCCTTgtgggaggaggaagaggaacaTTGTGTATGCTTTCACCCCTCTCCATCTCAGTTTGGAACATTTTGAAAGCTGGTGTCTCATGCTGAACGAATGCAGCGTCCCAAACCTCTTTTCTGTACTCAGAACAATTTCATAACTTGTTTCTAGTCACACTCTATAAGGTCATGTTTTGCCTTTTAGGCTTTCAAAAATAAGCAATTGCACAAGCTTCAGCCACATTTCAGGCCAGCATCCACTCAGGATTCATTAGAGATTATGTCAACCCTCAAGTTCTGTTAGTCTCCACCCTTTCTGAAGACTTGAAAAAGTGCACTGTGGAGGACAGCCCCaagtgtgcgtgcgtgtgcgtgtgtgtgtgtatgtgtgtgcgtatagGCAggggtgagaaagaaagaggaacaaTTAACATTAATACTGTTGGACgcaacatcacaaaaacatatCAGCGTAAGTCCTGAAATAGCACAGATAACTGAGTAAATCTCCCACTAAGTCAATCCTGAGAGAGGTGCTGATTATCTTTGTTGTCTGTATTGCAACACACTGCTACTTGCAGTGAGAGGCAGTCATAATCAGAGTCTGTAGGaggggtcaaaacacaggcagctAAAGTTAGATAGGGATAATTTATAATCAAAACCAAGAAGTAAAAAGATATACAGAACTCACAAACCATAGTTTGGACATAAAGTTACTAAATGCATGATAAGACTTCGCAATAAACAATGACAAAACAGGGTCAAAACTAATCAAGGACTAACatggaacaggtgaacacaatcggGTAACAAACCAGTGACCGGATAGGAgtggagacaggactagaaccaAAACATGAACATGGTGTTCATTGTCATTGTCTCGGCTGTTTAAATAGCTGGAAATGCAAAGACTGAATCTCAGCCAGCTTCCtatagtgcactacttagggttcctatagtgcactacttaggcTACTTATAATGGGAGTAGGGGGCCATTTGGAACCAGCCTATGTTTTTGGTTGAATTAATTTAGcatgataaatttaaattaatttatcatGTACATGGCAACAATAATGTTGCACCATGCAATCTACTTTTTATAATAACCCTCTCATAAAACTGAGAAGCATTTGACATGCTGTCTTCTCTGACATTAGGGCTTTTTCACACTGCGTTTAACCCCGGGTTACCGTTGTTCTAAACCCTGCTTTTAACCCCGGGGTTATGAAACCCTGCTCGGAAGCAGGGTTAGCACGGCATTGCAGTGCcaaacatgtacagtatgaaCAGATGCGATGTTAGAATGTTATGGCTAGATGCTTAGCAACAGACATGCAATCAGAAATTGAATAGCGCATGCATTTTGACTCATTGATGCGAAAGTGCAAGACAAGCCGTTACTTAAACCGGTTGCGCGCAATATTTCTCCAATCATGAATGTTGACACTGCAAATAACCCAGTGTTTAGGAAAGTACAGTGTGAAGCATCAGATTATGACTACCCGGGTCTAACTGTTAACCCCGGGTAAAGTATGAGCAATGTGAAACATGAAACAAGATAATCCAGGATTCCTTTTACCTGGGGTTTACAATGACCCAGGGGTAACTATTTCAAGTGTGAAAAACTCTATTATGAATGAAGTTTCTATCACCGATctgttagagaaaaatgttCAGCACAAACGCCGAGACTGGCCGTGTTGGTGTATCCTCCTGCATTCTTATGAGCCGGCATCGGATCAGAGGTGAGAGCCGGAAGGGTCATGGTGCCGTCACATCCCTGAACATTACAAGACTTAACCATGGTGCTGTACTTATGACCTAATCTGAATAAACTAAAGGGTATTACAAATATGTGTAATTATATTCAAACGTATATTTTAAAAGGACTATAATTAGGAAGCGAAACCCTAAAAATGGCTAATATTGACTGGTTACTTAACACTACACAGCCGTAACATAGAGCTGACCCGTGATGCATTTAGGGGGTGTCACCTGTTGAAAGGTCACTGCCCACTGATAGGTAAATGAGTGACAAATTCTTCCTTATTAATATAATAAGGTGGCGGCAGAATGTACCATTGTTTaccattaaaaatatgtatactAACAAAAATTTATTGTGAATGTGGGTGGAGTTCACATCTCCAgggtttgcatgttcttttCATGTCCATGTAGGTTTTCTCTAcctcctaaaaacatgctacTGGTGAGCTTGGTATCCTGCAATGGACATCCCATCCAGGGCGTATTCCTGCCTCGAGCCCACTGTTCCCGGGATTGGCTCGGGATCCGCCACAACCCAGAGTAAAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU440604 lncRNA downstream 32443 7357311 ~ 7378538 (-) False LOC113537388
TU440456 lncRNA downstream 227595 7183176 ~ 7183386 (-) True G371793
TU440449 lncRNA downstream 257822 7151438 ~ 7153159 (-) True G371787
TU440274 lncRNA downstream 509638 6891766 ~ 6901343 (-) True G371634
TU440265 lncRNA downstream 529201 6879870 ~ 6881780 (-) True G371625
TU440643 lncRNA upstream 52771 7467789 ~ 7468460 (-) True G371964
TU440646 lncRNA upstream 60885 7475903 ~ 7476105 (-) True G371967
TU440605 lncRNA upstream 62862 7477880 ~ 7478230 (-) False LOC113537388
TU440719 lncRNA upstream 169246 7584264 ~ 7584503 (-) True G372034
TU440722 lncRNA upstream 174796 7589814 ~ 7590030 (-) True G372037
XM_026932157.2 mRNA downstream 108417 7253751 ~ 7302564 (-) False mid1
XM_026932159.2 mRNA downstream 108418 7253751 ~ 7302563 (-) False mid1
XM_026932158.2 mRNA downstream 124184 7253751 ~ 7286797 (-) False mid1
XM_026932156.2 mRNA downstream 124184 7253751 ~ 7286797 (-) False mid1
XM_034300334.1 mRNA downstream 126502 7253751 ~ 7284479 (-) False mid1
XM_026931620.2 mRNA upstream 497192 7912210 ~ 7993096 (-) True fam155a
XM_026932396.2 mRNA upstream 591354 8006372 ~ 8010233 (-) True lig4
XM_026931738.2 mRNA upstream 627467 8042485 ~ 8054545 (-) True irs2a
XM_026931731.2 mRNA upstream 647203 8062221 ~ 8066451 (-) True LOC113537312
XM_026931658.2 mRNA upstream 654384 8069402 ~ 8084485 (-) True cars2
TU440391 other downstream 342450 7058835 ~ 7068531 (-) True LOC113537271
XR_004577289.1 other downstream 342514 7058835 ~ 7068467 (-) False LOC113537271
XR_004577329.1 other downstream 1047778 6358639 ~ 6363203 (-) False LOC113537742
XR_004577328.1 other downstream 1377588 6019687 ~ 6033393 (-) False tpp2
XR_003403780.2 other downstream 1458668 5942429 ~ 5952313 (-) False LOC113537623
TU440780 other upstream 303245 7718263 ~ 7724795 (-) True G372086
TU440974 other upstream 497448 7912466 ~ 7916321 (-) False fam155a
TU441267 other upstream 905966 8320984 ~ 8329026 (-) False timmdc1
TU441284 other upstream 1014593 8429611 ~ 8432424 (-) False LOC113537606
XR_004577317.1 other upstream 1176389 8591407 ~ 8606840 (-) True tsga10

Expression Profile