RNA id: TU441222


Basic Information

Item Value
RNA id TU441222
length 4699
lncRNA type sense_over
GC content 0.37
exon number 3
gene id LOC113537489
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 8261435 ~ 8267272 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCACATTGCTGCAACCCAGAGTTATCCGAGATCTGAAACGCTAATTGGTCTATATAGACACTCAGCAACCATGTCTGACAAACCCAATCTCGATGAGGTCACCAGCTTCGACAAGAGCAAGCTGAAGAAGACTGAGACTCAGGAGAAGAACCCGCTCCCATCTAAAGAAACCATCGAACAGGAGAAGCAGGCGACATCGTGAAGACCCCAAGCTGCCATCATGCACTGTGCACACCCCCTTTCCCACACATTGCCTTCTTTTTGTTCACTTCTTTTAGCTGTATAACTCTGTAaccaaaatgtcaaaaaaaaacaaaaggaaaaaaaatgctaaaaagaaaACCCTAAAGCTGCCATCAACGTTGGGTGGACCTGAAATCATCCTCCACCAACAGCCAGAAGACGAAAACCATCCACCCACCCCCCTTTTCCAAACCAGCAATGAAAAAGTGCGCTTCTAACGCTTTGGCGCACGCAGCTTGGATCCATCTGGCTTCCATGGCCTCGGCTATTGGCGTAGAGACAGAAGAGGGGCAAAGGAcaaagggggcgtggcttcgGAATGTGGACATTCCCAAAAATTTTCATTGACCAATCGGGGTATGGCTTTATGTCAACGTGTGACCAGCTCACCATTTTGTGGCgttgcatttcttttctttcttttttttttattaagaaattgagttttacagtaaaatgcaCAATATTTGGTTTTTGTATGTCATCAATGATTAATACCTTCTTGTTAGCGCTGCTTCAAGCAAATGTTTTTTGATTGACacaaaagaggaagaggaaacagTGGAAGCCACCTAGATGGGGAAACATTCCTAAGGCACAAGAGggttttttaaaactgattgtACCCTTTTTTTGTAcgtgtgggtttttttggggTTGCTTTTTGTGTTGCGCCCAATCTCAATTGTCCTGTTGTATGGAAGCTGTCAATTCTGGAAATGAAAATTTCCATGTGGTCGCTTTCAAGCGTTGATGaaattggttttttttttgtttgttttgtttttttccttgggTTTCTGTAATACTCAGCAAACCATGTTATTTTGCCACAAACCCATtctcaaaaatggaaaaaggaaCGTGTTGTAATAAAGCCTTTGTTATCAAAATGCGTTTCTGCCCCATTGTTTACTTTCACTTACACTTTATAAGGCTATTTTCTAGGAATTCATagcatgagaggtttttaacaATACATCAGAAGTAGGTAGTGTTGAATCTATTCAGAGTCAACATTTTCCtttagtgttaatgtttgtgCACATAAAGGAGAGCTGCTAATTGAATAGAATATCCAACAATGTCGTTCTTCATGACGTACTAAATAACTCAAAAGATTCAAATCAGTTTACGTCAATTTGGTGGAAATATATGGAGTGTCTCTCCAGTGTCTGTGAGCATAAATCCGAGTAGCTGGCAGCGAGGCTTCCTGACTCGCAGGTGGTGGTTTGGCATTCAGACCATCCAATTAGTGTGCGACTCTGTGCTGTGCATGCTGCGTTTCAAAGCCTGCTTCCTTTACCTAAGATTAGTGTTTACCTGCAAAGCTTTTTAGCATTACCTGAGTTAGTGTTCTCTAATTATATTCCAAAAAAATGGCCTACATGAAGGTTCATACCATTCCAGTTCTATGAAATCACTGACTTAAGTGAAGCGTCAGCCCTAAAGTCAATATTGCTGATTCATGACTTGTACACATAAGTGAGTTTTAATATTTAGGGTATGACCGCAGGCCTACACTAGTGTGACCGTCTAGCCTGATAACGAATTCTGTTGCTTGACGCTATACCAGTGTTGATGACAtcatacaaaaatatttctagattttttttttttcaatttatgaATTGTTTTGATTAAGTACTAAATGAGAGTGATCCTCCTAACACTTTTCCTAACTAAATGATTTAATGTTTCTACTGCTACTACAGTGTTACGTATGTAATGCCATCTCCTTTAAATGAGACTGCAACAAATTGGATGTATTCCATAACAAGATATGAAAATATCTGTAGCATTTAAATTCACCAATCTCAATCTGCCAATTTCTTCATACTTTCCAAACAGCAGCTTAGCAGTCTCTGTCTGTATATTAGCTCTGTCACTACATGACCTAACAACTAATTACCTCATTTGTAAGTGAACAATAACCTTCCACAAACCACGTTTAGCTAGTTTAGCCAGATCATGATGCTATCAAACCCACGGGCCTACTACCTAGGGCTAgctaacaaataaaaagaaattattttactttgtaaCAAGAAATGTTAATAGAAATCCaacattatacaaaaatattaactaaCCAGCTAGCTGCTAATGTTTATCCCTAACAAGTTTAGCTACTTAAAGTTAGCAAGTTTCCCAAAATGAAGCTAGCTAATGCTGGGATGATGTGTCATGTTTTGATGTGAGCTAGCCATtgaattatctatctatctttgaCTGTAAATCAGTATATTTATGATTCAGCTAAGCTATACCTGAGCTTACATATGTACAGTGTAATTTTTTCATGCACTTTACTTGGTTGTCTGTTCTTCTTACTTGACCATGACGTAATAAGCTTTTTCTGCTCTGTAACACAATCTGACACACTTAGCACACAGATAATCTCATATGCCTGTGTAAGTGGATTGGTCTTAAGTCAGTTGGTCTTAATACTGTATTAATCTGTTGCACAAGTGGAGTTGTGCTGGATGGGTGGAGGCTGGAATGTTCTTGAGTGTGTATTTACAGCAACTTCACAAGCAGAAGGCTTGAAAAACACCTTCTGCAttgttctgttttctctcttgctttcttacACACCTTCTTTCCACACCTCCTCCTTCCAGAAAAGATGTTAATTAAAGATTCCCTGCCTGCGGGGAGCTTCATGCATGTACAAATCAACTATAATAGCACATTACACACCCTTTGCTGATGTGCTGCAGCGATAAAGACAAGAAGTAGTAGAGATGCTTCTACCCCGAAGGTAAACAGATCCAGACATGCCTTAGGAATTTAGGAAAAGCTATAGAGACGATCCTGAGGAAAGCATAGTATCCCCCTGAACTTACATATAACTTTACTACCTCATAAATTCGGTGGTATCCCGATACACAAAAGTGATTTtgtttaaattgattttaaaaaagctacAGTTATTAACCCCGCCCCTCACACTAAACCTAGCTGGTTGTAACTTTTCTTAATTGGATTATCTAAATTCCTACAAATTTGCAATCATTACACCATGTTGAAATAGTGTTATAACGGtcaaataagtaaggaataaaatacacgacagggcatgctgttataggaaactaatccacGCTGGGGTAGTGTGAGACGGCCTGAtgcaaaataaattgttttcctataactgcaaatcccgaagtgttttattcctcttctaccataGTGATTTATTAACGAACAACACTtcacactttttaaccatttataattacTGTTATAATTACTGttataatttaatgttatgtCATCCATGAGACAAAGTAGTTCTagatttcatttacattatagcagctataaatagtcactCCTTCatcagactctcttttttctttctcttgaagatcataaaaataatttttaaaaaattattttaatgcagcttttcatgttacagagaaaccagaaaacacaaactcctctgtctagaaaactttcctgtggtggaaaatgtaatgttacactggagcactgacactggagactccttccattaatgttcaGTGagtgtctccttacagaaatcctCACCACATCATtgattagatgtttttctttggtaaataacacattttttttaaaccacttaTTTATTAGACTTAGCTTATGTGGAGTATGcaccataaaagtccctgtgaatgagtagTAATGATTAACGTATTAGAACGGGTGCATTAGTATTAAACTATTGCTTatattacagctggaactattgtcagagctgctgttatagaaaataaatccacactttcagatttaagaatccaacagtgctgtggtaaaattgttttataatGGCCCAATGAAGAGTATTACAACaggcaaaagaaaataaatttcttaGTTATAAATTAAAGGTTTGGTTACCACAGATTGATTGAGCAACAATCAATTCACATTTAGACTGATCATAGAAAATGGCTATAAAATGGATATAAAACAGTGTCTTGTGTAAGTCTTGTATTTATAATGCACATTTTAAGTACTATGAAAGACCGCAGGTGCTAGCTGACCTCCAGCTCAACCTCAAACACTGGGAGTTTTATTTAAGatcaaaacctctacagattACCAATCTGTTCATGAGGACTGAGATGGGGATACTAGATAAAATCTAGTTCTACTGTTATTTGTCCATTGATCTTTCTGCCTCATCTCAACCAAAACCAGTGGGGGGCATTTAGCTTTTCACAAGCTGTTGCACATAGGATTGTGGCTCAGTGCCATTTCATGACTAATGTTTTGGTGCAAACTGCCAAGAATATCCATGTCTTTGATATGCTTTCTAGCTTAGGTTCCATGGCGTAGTGATGGCAGTCATTTACTTTTGTCAATGTTACTACAGTGTGATTGTATATACTGCAAACTAATCATTGGAATTATTCCACTTAAGCTCTAGTAATATTATGTATAGACAATATCTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU441219 lncRNA downstream 57211 8202768 ~ 8204224 (-) True G372471
TU441040 lncRNA downstream 176896 8082963 ~ 8084539 (-) False cars2
TU441021 lncRNA downstream 245047 8016105 ~ 8016388 (-) True G372307
TU441014 lncRNA downstream 272237 7988950 ~ 7989198 (-) True G372300
TU441002 lncRNA downstream 284444 7976777 ~ 7976991 (-) True G372288
TU441285 lncRNA upstream 161415 8428604 ~ 8444065 (-) True G372522
TU441552 lncRNA upstream 507843 8775032 ~ 8788141 (-) True G372742
XR_003403741.2 lncRNA upstream 696396 8963585 ~ 8965621 (-) False LOC113537261
XR_003403742.2 lncRNA upstream 696396 8963585 ~ 8965428 (-) True LOC113537261
TU442113 lncRNA upstream 1492552 9759741 ~ 9759949 (-) True G373288
XM_026931961.2 mRNA downstream 38892 8218639 ~ 8222543 (-) True LOC113537479
XM_026931962.2 mRNA downstream 43240 8212903 ~ 8218195 (-) True rab9a
XM_026932222.2 mRNA downstream 103875 8150140 ~ 8157560 (-) True u2af1
XM_026932402.2 mRNA downstream 112902 8132987 ~ 8148533 (-) True cbsa
XM_026932151.2 mRNA downstream 130252 8127561 ~ 8131183 (-) True cryaa
XM_026931948.2 mRNA upstream 21972 8289161 ~ 8291351 (-) True zgc:64002
XM_026931946.2 mRNA upstream 27690 8294879 ~ 8319843 (-) False gk
XM_026931947.2 mRNA upstream 27690 8294879 ~ 8319843 (-) False gk
XM_026931945.2 mRNA upstream 27690 8294879 ~ 8319843 (-) True gk
XM_026931720.2 mRNA upstream 53679 8320868 ~ 8328976 (-) True timmdc1
TU440974 other downstream 345114 7912466 ~ 7916321 (-) False fam155a
TU440780 other downstream 536640 7718263 ~ 7724795 (-) True G372086
TU440391 other downstream 1192904 7058835 ~ 7068531 (-) True LOC113537271
XR_004577289.1 other downstream 1192968 7058835 ~ 7068467 (-) False LOC113537271
XR_004577329.1 other downstream 1898232 6358639 ~ 6363203 (-) False LOC113537742
TU441267 other upstream 53795 8320984 ~ 8329026 (-) False timmdc1
TU441284 other upstream 162422 8429611 ~ 8432424 (-) False LOC113537606
XR_004577317.1 other upstream 324218 8591407 ~ 8606840 (-) True tsga10
TU442201 other upstream 1611654 9878843 ~ 9918740 (-) True LOC117596103
TU442843 other upstream 2604095 10871284 ~ 10872546 (-) False lipt1

Expression Profile