RNA id: TU443072


Basic Information

Item Value
RNA id TU443072
length 1022
lncRNA type inter_gene
GC content 0.51
exon number 4
gene id G374093
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11084642 ~ 11120831 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCCACATTAcaccctttctctccctctttcttctcctctttctcagGATCCACATCCATCTTCTCCTCGTTTCTGTCTTTCGCCTCATCTTGAACTCCCTGACCCTCATCTTCCTCACTGAGGCAGAGAAAGCCCTCTTTCACTTCCGGATCACACTCCAGGCTGGCGGCCGGAGAACCGGAAGGAGACGAGGAGGAGATGCTCTTACTGCTTTTCTCCTCCGCTAAACCGTTGTCAAGGGAAGTGCTGTCTGTATCCATGGGCAGCTCGCCGTTCAACACTTGGTCTGTGGAAGTCTTTTTCTGCTCTGCCTTCTTGTCAGACACTGATGGAGAACCGGTGCGTGCAGATTTGGTAGTCTGGAATAAAAGAAGCCTTTCTTCAGAGACGGAGAAGGTGAGGGGTTTCGATTTTCGCTGACAGCCGGAGAGGGCGATCGTGAGAGCAAGACCGTGCGCGATGGTACAGGGGAAGAACGTGACAAGGGCGAGGCAGGAGACTTTGTCCCAGACTCCTTGTCCTTCTCTTTCCCCTTCTGTCCATCCTCCGCATGCGTTCCGTTTACCAGCGGTGTCTGGGGCCGTGAGGAAGATGAGTTGGGGTTTGTAGTCACCAAGGTGTTGTGCAGCACCTCCAGCTGCTGACGGTCGctcatcttcatggtttttcgAGCGCGGAAAATCTTCTTCTGAGGCTCTTCTGGAACGGCAACTTCCATTTTTTCACCTGGTTAACTGATCGCTGTGTTCCTCTGTACCTCCCTGTTCATGGAGGGATTTGCCCACAAGATTTTACAGGAACCTGAggCCAGTGTTTTAAGACCGGCGATGCGCGTGTACTTTCACCGGTACGTCCAGAATGTATGAGTAAAGCACTAGTCTTTGCTTTGTTATTGTTTACATGTACTGATTCTGTTCCTAATTTGAAAGTGCCAGGCTTACAGCGTGACTCGTCAACGCGTAAGGGTGACGGAATTGCATacagtcacacaaacacacaagtggACTGACTGTAGACAGTa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443070 lncRNA downstream 16690 11067731 ~ 11067952 (-) True G374091
TU443008 lncRNA downstream 151235 10929739 ~ 10933407 (-) True G374039
TU443009 lncRNA downstream 155088 10928467 ~ 10929554 (-) True G374040
XR_004577288.1 lncRNA downstream 287445 10676632 ~ 10797197 (-) True LOC117596123
XR_004577287.1 lncRNA downstream 290085 10676632 ~ 10794557 (-) False LOC117596123
TU443088 lncRNA upstream 18352 11139183 ~ 11139811 (-) True G374105
TU443094 lncRNA upstream 26623 11147454 ~ 11147673 (-) True G374111
TU443180 lncRNA upstream 116231 11237062 ~ 11237431 (-) True G374196
TU443185 lncRNA upstream 117410 11238241 ~ 11242837 (-) True G374198
TU443184 lncRNA upstream 117886 11238717 ~ 11242837 (-) False G374198
XM_026931676.2 mRNA downstream 32530 11046759 ~ 11052112 (-) True trappc5
XM_026932266.2 mRNA downstream 38577 11025293 ~ 11046065 (-) True mcoln1a
XM_034300386.1 mRNA downstream 64662 11004546 ~ 11019980 (-) False si:ch211-214c7.4
XM_026931664.2 mRNA downstream 66938 11001667 ~ 11017704 (-) False si:ch211-214c7.4
XM_034299986.1 mRNA upstream 126978 11247809 ~ 11258475 (-) True si:ch211-243a20.3
XM_026932104.2 mRNA upstream 154431 11275262 ~ 11280128 (-) False emp1
XM_026932103.2 mRNA upstream 154431 11275262 ~ 11279363 (-) False emp1
XM_026932105.2 mRNA upstream 154431 11275262 ~ 11279214 (-) True emp1
XM_026932121.2 mRNA upstream 181952 11302783 ~ 11308486 (-) False LOC113537574
TU442843 other downstream 212096 10871284 ~ 10872546 (-) False lipt1
TU442201 other downstream 1165902 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 2477802 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 2652218 8429611 ~ 8432424 (-) False LOC113537606
TU441267 other downstream 2755616 8320984 ~ 8329026 (-) False timmdc1
trnar-ucu_14 other upstream 352049 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 2188207 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 2203251 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 2204686 13325517 ~ 13325608 (-) True trnar-ucu_16
trnar-ucu_17 other upstream 2205162 13325993 ~ 13326084 (-) True trnar-ucu_17

Expression Profile