RNA id: TU443394


Basic Information

Item Value
RNA id TU443394
length 1048
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G374371
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11595192 ~ 11596239 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATGTTGTAACAGAAAATCACTATTAATTTATCACTGAATTTGGGTTcctaaataaacataaaatagcGGTACATTTTTCATCCAGAACCTACAGAAAACCTTGCACTCAGCTACAATTGTGAGCAAAGACCTCTGAACCGAAGTCAAAATGGCGCCATCTATTGACAATGCAGAACCACAGATCCTAAACTAAagctttttatatttgtaaaatgaCCACAGTATTGCTTCATATTAATGTGGTGGTCAGTGACAACAGCAAAACATACATTACCAGTCAGTTTGTCATTGTCTTAAAGTGAAATCAAGTGATTCCAACTGTCCAAGTTGGCCACTGGATAACATTAGTGTTCTGCTACACTGTGAGGTTTAGTTCATGTTTACAAATTACAGTAAGTTCCACTGTGTACTAAACCACATCATTAAGTCTGAGTGACGtcactgaagaactggatgcTTTCTGAGtcagatatagtgcatttatCATTCCCATTTCCCCTGATCATCCATGATTCAAGTTCACCTGTCGATTGAGAACGACACAAAAAACAAGCCATGGGATCAAAGAAATTGCCCACAGACCTCTGATACTGGAGTGATTCAGGGACTGGTATGTGTAAGATTTCTGCAGCTTTGAAGGTTTTCAAGAATACAGTACAAGAATACAGAATACAAGAATCTATcattcttaaatggaagaatTTCAGTAGCACCTCTCTGAACCGTCCAGCCAAACTGAGCAAATAAGTAAGAAGGGTTGTAAACTCAGAGCCAAACCTCTGAAGTGCTCTAGAAGTCCTGTGCTGAGGATGACACCTCTAGTGCATCTGAAGAGGACTGAAGCCAGTCTGGTGTAAGAGACACATGACGAAGACTCTGAggcaataagaaaaaaatattcaccaagatgaaaccaagattggACAGACATAACATTTGAAAGAATACAGGTATCACTCAACACCTGTGGAAGCCCATCCTTActatgaagcatggtggtggcagtatAAAAATCATAAGGCTGTTATTCAGCAGAAGGAACCAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443391 lncRNA downstream 211 11593966 ~ 11594981 (-) True G374370
TU443231 lncRNA downstream 234771 11358843 ~ 11360421 (-) True G374230
TU443185 lncRNA downstream 352355 11238241 ~ 11242837 (-) True G374198
TU443184 lncRNA downstream 352355 11238717 ~ 11242837 (-) False G374198
TU443180 lncRNA downstream 357761 11237062 ~ 11237431 (-) True G374196
TU443474 lncRNA upstream 72754 11668993 ~ 11669256 (-) True G374442
TU443528 lncRNA upstream 156335 11752574 ~ 11755115 (-) True G374495
TU443718 lncRNA upstream 338295 11934534 ~ 11943075 (-) True G374657
TU443741 lncRNA upstream 367565 11963804 ~ 11964781 (-) True G374680
TU443757 lncRNA upstream 482652 12078891 ~ 12084032 (-) True mzt1
XM_026932394.2 mRNA downstream 42470 11546974 ~ 11552722 (-) True alg11
XM_026931632.2 mRNA downstream 51495 11539380 ~ 11543697 (-) True spp2
XM_034300268.1 mRNA downstream 123805 11467404 ~ 11471387 (-) False pld6
XM_026931929.2 mRNA upstream 70670 11666909 ~ 11690520 (-) True march4l
XM_034300193.1 mRNA upstream 173607 11769846 ~ 11866324 (-) False vps8
XM_034300192.1 mRNA upstream 173607 11769846 ~ 11866324 (-) False vps8
XM_034300191.1 mRNA upstream 173607 11769846 ~ 11866324 (-) False vps8
XM_034300190.1 mRNA upstream 173607 11769846 ~ 11866324 (-) True vps8
trnar-ucu_14 other downstream 122221 11472880 ~ 11472971 (-) True trnar-ucu_14
TU442843 other downstream 722646 10871284 ~ 10872546 (-) False lipt1
TU442201 other downstream 1676452 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 2988352 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 3162768 8429611 ~ 8432424 (-) False LOC113537606
TU444510 other upstream 1712799 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 1727843 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 1729278 13325517 ~ 13325608 (-) True trnar-ucu_16
trnar-ucu_17 other upstream 1729754 13325993 ~ 13326084 (-) True trnar-ucu_17
trnar-ucu_18 other upstream 1731813 13328052 ~ 13328143 (-) True trnar-ucu_18

Expression Profile