RNA id: TU443528


Basic Information

Item Value
RNA id TU443528
length 2453
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G374495
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11752574 ~ 11755115 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATATAAGAAAGGGGTTTATTTAAAGGCAAGATAAACATTTGTGTATCTACAGTACATATTTATAGCTACAGTATTATTCCCTGATATAAAACTGCAGAGATACAGGGACACCCATTTATTTATCCACCAGCAGGAGAGGTAATCATACAAATAATTGAGTGTGGGGTTCCTCAGGGCTGCATGACAGGTCCATTAGGTTTTCTACATAAGCAGTTTAAAAATGGACTTTTCTGCTCAGCCAGTGACAAAGTTCTATGCTTATAAACAGAGACGCTATTATCACAGACTGGAGCCATCATCAGAGACGAACAGGAGTGGAGTGTCAACAAAAGTTTAGTGTCCACTCCAGGGAGGACAGAAACAGTGATCCTTAACAGTCTCTTTCTTAATGCAGTTGCACAACTGTTTCAACTGTGATTTAAATACAATTGTAATCCCACATCAGGGATTTCTGAACCCAAAATGAAAGTACTGTACAGTTGTATAATGCAGTGAAAGGGATGGTTAGATCACTTTGTCCTGGGCATCATTTTAATCTCATTTACGTCTGAGACTAGCTAAATCATCACGGTTATATCAGACAGTAGCGATTTCATGCACTTGCATTAATAATCAGTGGTTGTCGGCTGGGCTGAAGTGGTTTTTAATGCTTGGTATTAAATTCTGTTGGCTCGTAGCTCTCAGGTCCATGCAGGCTGTGCTTTTACGTGTGGGCTGCCAGCTTCAAAGCACTCTAAAATGTGTCTCTTAGGACGTAGAGATGACCTCTGCCCACGAGTGCCCACAGTAGTATAAAATAGATAATCACTTCCATCCAAAGACAGTACAGTGAGTTCATCATGTGCTTAGGTCATACATCATTGGTTATTAAATAGGCTGTGAGTATTTTGTTGGGGGAAAAAGGAGCATGGCCAATAAACATCCTCAAAGAAATAATTGCTGCTCTCTGAACTAGAGCTTTGATTTGGTTTCAGTGATGACAGCGGTGTGGTAGCTTTCATACTACTACACAAATGGTTCAAAGTATCCACACTGTGCTTTAAGGAGGACATAACACACCATCTCACCCCTTGAAGTTCTGCTGATAATCAGTTCTTTGAAACTACCCCTAGATCTATATCATTAAATGATTGTCAAGACATTGGAATTCATTCTGCTAAATCTCCTGAAAGCTTCAGGGCTCTTCACCGTTGAGGAAGGAAAAATTGAAAGGAAGCTGTAAGTCAGTACTCTGTGGAGACTTGCGAATATGTGGTCTTTCTTCACATCGTGTCCTTACAGTCTTCTGAACTCATGCATGATTTAGTCACACTTCAAATGGTGCTTGCTTAAAAGAGACTGAAGAGCTTCTCACCCTGTTCTGCCCTTCTCTCTcaattttttccacttttttctctcttctacAGAAGATGACATTTCATATTCTCACTCTATTGCCTCCTTTTATTGCCTATCATATTCTCCTCCATTCGTTTGTgatgtatttaatattcaggtccttggagagagagaatatccATACAAGGTTATTCCTGTAGAGTAAGCACTAGCTCTTCTTGTTTACTGAGGAAATGTGCGCTTGTGTATGTGTCacaattcattttaaactcGCTCTTTTAGCCTGTGCAGAAAACCTGCATAACAGCTTCGTTTGGCCATACGTGGCACTACATACATGCATGAACGTATTTGTGAAATCTACTGTGTATAATCCATAGCAGGGTCACCATGCAAAGAGGGGACTCGTGTATAAAGGACATGAAGGGTGTAGGAGCTGACTGACAGGAGGACCAGTGAGAAGGCTTCCATGTAATTATCACCATGTGACCAGTTGGCTTTTAGGTTGCGCTCTTGTTTTGCCAACCAACTTGCATCCTCAAGTTGAAGACTGTCGACTTGGACGGCGAGAGCAGAGTGCATTCATCCTGCTCCCAGAGGCTCCCAGGACTGGAGTTGCCATCTGTGCTCAATTCATCGTCGTCCTCCTCATcgtcctcctcatcatcctcacaGGAGTCGTCCTCACAAGACTCCACGTAGTGAAGACCCAAGGCGTTGATCCCAGAATCCTCTGAGCTGGATGGTGAGGAGCAGTGGTCCATTTTGGGACCCTTTTGGCCTTGCGTGGCTGGAGTTTGGGCTACTGGGGATGGCTGGTTTTGAGTGTGCTGATTGGGCGGCTTGGCTGGTGAGGCCGGTGCCCTCTCTCGAGGAACAGGCACTGCTGCTAGAGGCCTCTGAACGTAGCACATCTTGCCATTGATCCGTTTTACAATGTAGTCGTCGACAAAAAGGTCAGAGATGATGCAGAATCTAGGGGACTCTGGGCAGGGTGGAGCTCTGAATTTGGGGGCGGTCCTGAGGAGACGCTCAGTCAAGGAGATTGACAGGTTTATGGTGTCGGTGTGATCTGAGGGTGAGGCAGGGACTGGTGTGGTGGGAAGCTGGCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443474 lncRNA downstream 83318 11668993 ~ 11669256 (-) True G374442
TU443394 lncRNA downstream 156335 11595192 ~ 11596239 (-) True G374371
TU443391 lncRNA downstream 157593 11593966 ~ 11594981 (-) True G374370
TU443231 lncRNA downstream 392153 11358843 ~ 11360421 (-) True G374230
TU443185 lncRNA downstream 509737 11238241 ~ 11242837 (-) True G374198
TU443718 lncRNA upstream 179419 11934534 ~ 11943075 (-) True G374657
TU443741 lncRNA upstream 208689 11963804 ~ 11964781 (-) True G374680
TU443757 lncRNA upstream 323776 12078891 ~ 12084032 (-) True mzt1
TU443791 lncRNA upstream 337397 12092512 ~ 12092736 (-) True G374727
TU443961 lncRNA upstream 403593 12158708 ~ 12158915 (-) True G374885
XM_026931929.2 mRNA downstream 62054 11666909 ~ 11690520 (-) True march4l
XM_026932394.2 mRNA downstream 199852 11546974 ~ 11552722 (-) True alg11
XM_026931632.2 mRNA downstream 208877 11539380 ~ 11543697 (-) True spp2
XM_034300268.1 mRNA downstream 281187 11467404 ~ 11471387 (-) False pld6
XM_034300193.1 mRNA upstream 14731 11769846 ~ 11866324 (-) False vps8
XM_034300192.1 mRNA upstream 14731 11769846 ~ 11866324 (-) False vps8
XM_034300191.1 mRNA upstream 14731 11769846 ~ 11866324 (-) False vps8
XM_034300190.1 mRNA upstream 14731 11769846 ~ 11866324 (-) True vps8
XM_034299877.1 mRNA upstream 136559 11891674 ~ 11937127 (-) True igf2bp2b
trnar-ucu_14 other downstream 279603 11472880 ~ 11472971 (-) True trnar-ucu_14
TU442843 other downstream 880028 10871284 ~ 10872546 (-) False lipt1
TU442201 other downstream 1833834 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 3145734 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 3320150 8429611 ~ 8432424 (-) False LOC113537606
TU444510 other upstream 1553923 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 1568967 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 1570402 13325517 ~ 13325608 (-) True trnar-ucu_16
trnar-ucu_17 other upstream 1570878 13325993 ~ 13326084 (-) True trnar-ucu_17
trnar-ucu_18 other upstream 1572937 13328052 ~ 13328143 (-) True trnar-ucu_18

Expression Profile