RNA id: TU443757


Basic Information

Item Value
RNA id TU443757
length 1558
lncRNA type sense_over
GC content 0.40
exon number 3
gene id mzt1
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 12078891 ~ 12084049 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATAGCGAAACTTTATTGATACGGTTCTTGTTAACGTGAAATGTGAATGGACCTCAATCTATAAATCTGTTATCGAGAGAGCTATCTATACAGGTGTGAACTCGTTTTTTTATAGTAACGTGAAGAATACTTAGGGATCGGAGAGAAAACCCCAGACGGAGAGGAAGAAAGGAGTGTTGTTGCTAAGCTAGCGGTCATGGCTAGTGCCGCGAATACAAACATGAACGCTGTCCGGGAAACGATGGACGtTCTCCTGGAGATCTCAAGACTCCTTAACACTGGGCTCGACATGGAGTCGTTGTCCATCTGCGTGCGGCTGTGTGAGCAGGGCATCAACCCCGAAGCGCTCTCATCAGTTATAAAGGAGCTACGCAGAGCCACGGACACACTTAAGGCCTCTGACAACAGCACAAGCCAAGGATAAGTCACACCAGGCTCAATGGCTTTGCTCGGAGAAATTGCTCTAGAAGAAATTTCATCAATTCACCAAGAGATACTTAATAAGGGAATTTTTGTTCTCCATTTTCCCTTCagccttgtttttatttaatattttttttgtctttgtaaaATGACTTCCTTTTGTCTGTGCTCAAGTGAACTTGTGTGCTTTCATATATCcagtattttaaatgtatgtttccgtattttaattgttataaaatGACATGTCTGTCATTGTTATAAAAGTTTGTTTTGCCTATGAAGATGAGAGATTTTGTATTGGCTTACACTGTGGCTGATTTGTTTGTTGTGAGATGTCATGAGATTTCAGCACACAGCTGGACAGGGATAACACAGCTATATAAGCAGGatttgtgctgtgtgtttgtgttgtttgtccACTAGGTGGAGACAACGTGCAGCTCTGAGTCTTCTTGTAGCCTGTTAGACTGTGTGATTATGGCCAGGTCTGTCGTTAACAATGAGATCACTGGACCTTACTGTTAAAAAACCTGACTGATGTATGTGTTCGGTTTATGCTCCTGTTATACGTACTAGTGTGTAAAGTTTGCAATAGAACATTTCACgtacatcatttattcatttgttagaATCTTGTATCCGAACCCACTTACAGTGTCAGAAAAAGGGGTAGTGTACAGGTACGGTTGTGTTCCTCAAACTACTGTACAATGTAAATTAACCCACAACGATGCAACAGTTAGGTCCAACTTTTTACCCTAATGGTGTTTCTTTACaaataaaggtacaaaacaaTAAGTGTGTGTATCGTAAAACCCAGGTTTAGTAGCTCTTTGTCTGAGAGTGTAAACGtcaatccaatccaatccaagcCAATCTAAACATCTCGCTGTGAAGTTGagggcttttttattttatttttttgctcaaGCAGTCCTGTGATCTGAACTCAGAGAAACTTAAACTCCTATTGAACCTAAATCTCTGACTGCATTCTACATACTCAGAAATGGAAGCACGTACGTACATTAAAAAGTGCTTACAGATTTACGTTAATCCCCTACTTCCTTAAATGTTCATTTGGACATTCCAAGTTACTCGTTGCATGGCACAAATATCATAACTCAAGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443741 lncRNA downstream 114110 11963804 ~ 11964781 (-) True G374680
TU443718 lncRNA downstream 135816 11934534 ~ 11943075 (-) True G374657
TU443528 lncRNA downstream 323776 11752574 ~ 11755115 (-) True G374495
TU443474 lncRNA downstream 409635 11668993 ~ 11669256 (-) True G374442
TU443394 lncRNA downstream 482652 11595192 ~ 11596239 (-) True G374371
TU443791 lncRNA upstream 8480 12092512 ~ 12092736 (-) True G374727
TU443961 lncRNA upstream 74676 12158708 ~ 12158915 (-) True G374885
TU444014 lncRNA upstream 238932 12322964 ~ 12323575 (-) True G374935
TU444048 lncRNA upstream 352740 12436772 ~ 12437220 (-) True G374961
TU444049 lncRNA upstream 353324 12437356 ~ 12437686 (-) True G374962
XM_026931987.2 mRNA downstream 17506 11997011 ~ 12061385 (-) False dachc
XM_026931986.2 mRNA downstream 17506 11997011 ~ 12061385 (-) False dachc
XM_026931985.2 mRNA downstream 17506 11997011 ~ 12061385 (-) True dachc
XM_026931995.2 mRNA downstream 93996 11956736 ~ 11984895 (-) False ubac2
XM_026931994.2 mRNA downstream 93996 11956736 ~ 11984895 (-) True ubac2
XM_026931982.2 mRNA upstream 9290 12093322 ~ 12107492 (-) True dis3
XM_034300378.1 mRNA upstream 9290 12093322 ~ 12106546 (-) False dis3
XM_034300379.1 mRNA upstream 9290 12093322 ~ 12105794 (-) False dis3
XM_034300196.1 mRNA upstream 49443 12133475 ~ 12164139 (-) False dlx2b
XM_034300195.1 mRNA upstream 49443 12133475 ~ 12164139 (-) True dlx2b
trnar-ucu_14 other downstream 605920 11472880 ~ 11472971 (-) True trnar-ucu_14
TU442843 other downstream 1206345 10871284 ~ 10872546 (-) False lipt1
TU442201 other downstream 2160151 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 3472051 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 3646467 8429611 ~ 8432424 (-) False LOC113537606
TU444510 other upstream 1225006 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 1240050 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 1241485 13325517 ~ 13325608 (-) True trnar-ucu_16
trnar-ucu_17 other upstream 1241961 13325993 ~ 13326084 (-) True trnar-ucu_17
trnar-ucu_18 other upstream 1244020 13328052 ~ 13328143 (-) True trnar-ucu_18

Expression Profile