RNA id: XM_034300019.1


Basic Information

Item Value
RNA id XM_034300019.1
length 1888
RNA type mRNA
GC content 0.47
exon number 10
gene id gyg2
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 13307713 ~ 13320530 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCTGGAGTTACCATTAGGAGTGGTTGAGTTTCAGTTTGCTTCACACCATACAGGGCATAAGCTCTGCAGCCTTGGCTATAGAAGTGATTTCTAGATATAGCCAGTCAACTTGATTCTTGGAAAACGCAGAGTGATACACAGCGTGACAGTATTGGTCTCAGCACAGCAGCTGCCTTCGAATAGAACTCTGTACATGCTGGATTTTGTGGCCTGAATTTGTGTCCAGCTGAAGACACCAGGAGCATAGGCCAAAAGAACAACATAGAAAATGCCAGCTATTTTCTTGTCTGTCATTCTGTATTAGAGGCTAACCAGGCCTTTGTGACCCTGGCTACTAGTGATGCCTACTGCATGGGGAGTCTAGTGGTGGGCAAGTGCTTGCGAAAGCATGGAACAACTCGAAAACTGGTGGTGATGGTTTCTCCCAACATTAGCAGAGAGGCACGTTTGTCTTTAGAAGACGTGTTTGATGAGGTTGTAGTGGTGGACGTGTTGGACAGCAGGGACAGGGCTCACCTTTTCTGGCTGAGGCGTCCAGACCTGGGTGTCACCTTCACCAAACTTCACTGTTGGACGCTCACACAGTACACCAAATGTGTGTTTCTGGATGCTGATACACTTGTGCTGTGTAATGTCGATGAGCTGTTTGAGCGAGAAGAGCTCTCTGCGGCTCCAGATCCAGGCTGGCCCGATTGCTTCAACTCTGGCGTGTTTGTATTCAGACCGTCACTGGAGACCCACTCACACCTGCTGGAGCACGCCAAGATGTGTGGCAGCTTTGATGgaggtgaTCAGGGACTTTTAAATGCCTTTTTCAGTGACTGGGCAATAAAGGACATCAATAAGCATCTCCCATTCATTTACAACCTCAGCACCAATGCAATCTACACCTATTTACCAGCTTTCCACAATTATGGCCATCAAGCAAAGATCGTCCACTTCCTGGGAAAGAACAAGCCATGGCATGTTCCATACAAGCAGCAACCATCCACTGAGGTTACTCAATGGGATTCCAACAGGATCTTGGAGCAATATGTGAACCTGTGGTGGGCAGAGTACAACGCTCACACAAAAACGCATGTAGATGAGCCTGCTGAGCGCCATGATTCTGAACCGATTGAGCAGCTATGCAAAATGGCAGCTGCACCCTGTTCCACCCATGTGACCACTTCGCCACATAGGTCACAGCCCACTGCAACATCACCCACCGCTCCTTTTCCTCACAGCCGTGAGTCAGTCTCTCAGGCCGaggacagagaagagaaaatacCCAGTGAATCACTCGGGAAGCTGACGGTGAATGTGCCGAGCTCAAGTACATATCATCAGCTGGAGGACATGTGTTCTACTCTTGACATTGTATCTGCTGCCGATCCTGAGGATTTGGAAAAGTCCGAGCTTCAGGAGCCACTAGTTGAACAAAAACAATTAGAAGACGTCTCAGGAGCAGAATCTGCCCTCTCAGAAGCCACACCAGACAATTGTTCTACTCCTGATATTGCATCTGCTGCTAATCCTGAGGGTTTGAAAAAGTCCGAGCTTCAGGAACCACTAGTTGAACAAAAACAGTTCGAAGACGTCTCAGGAGCAGAATCTGCCCTCTCAGAAGCCACACCAGACAATGCCACAATGGAGGCTTTAAAGGAGAATTTGGAGCATCGGAAGAGGTGGGAAGAGGGCCATATTGATTACCTGGGCAAAGATGCCTTCGAGAACATCCGGATAAAGCTTGACCAATTTCTCAAATAATATCGTGTTTTATGCGTGTGAGTGAATAAGTAACAAATGTTCATTTGGATTGTATCCATTATCATTTCACTATGTCTACCTCTATTATATCTACTCTACAGCTAATCAAAGGGGCTCCTGAGTGACAcgcaaaaaaaa

Function

GO:

id name namespace
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU444472 lncRNA downstream 37801 13267882 ~ 13271621 (-) False G375329
TU444471 lncRNA downstream 38217 13267882 ~ 13271205 (-) True G375329
TU444257 lncRNA downstream 476068 12832876 ~ 12833354 (-) True G375141
TU444229 lncRNA downstream 566902 12742320 ~ 12742520 (-) True G375121
TU444227 lncRNA downstream 567770 12741425 ~ 12741652 (-) True G375119
XR_003403790.2 lncRNA upstream 66302 13386832 ~ 13401425 (-) True LOC113537738
XR_003403791.2 lncRNA upstream 66302 13386832 ~ 13399913 (-) False LOC113537738
TU444588 lncRNA upstream 96292 13416822 ~ 13417096 (-) True G375420
TU444627 lncRNA upstream 178113 13498643 ~ 13505565 (-) True G375455
XR_004577351.1 lncRNA upstream 183774 13504304 ~ 13507133 (-) True LOC117596174
XM_026931696.2 mRNA downstream 557583 12744261 ~ 12751839 (-) True pnpla4
XM_026931697.2 mRNA downstream 557688 12744261 ~ 12751734 (-) False pnpla4
XM_034299932.1 mRNA downstream 649929 12643943 ~ 12659493 (-) False LOC113537226
XM_034299933.1 mRNA downstream 652619 12643939 ~ 12656803 (-) False LOC113537226
XM_026931799.2 mRNA upstream 733 13321263 ~ 13348826 (-) False cd99
XM_026931800.2 mRNA upstream 10499 13331029 ~ 13348834 (-) True cd99
XM_026931688.2 mRNA upstream 96795 13417325 ~ 13427154 (-) True creb1a
XM_026931689.2 mRNA upstream 96795 13417325 ~ 13427153 (-) False creb1a
XM_026931655.2 mRNA upstream 155942 13476472 ~ 13478258 (-) True cldng
trnar-ucu_14 other downstream 1836451 11472880 ~ 11472971 (-) True trnar-ucu_14
TU442843 other downstream 2436876 10871284 ~ 10872546 (-) False lipt1
TU442201 other downstream 3390682 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 4702582 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 4876998 8429611 ~ 8432424 (-) False LOC113537606
trnar-ucu_15 other upstream 3552 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 4987 13325517 ~ 13325608 (-) True trnar-ucu_16
trnar-ucu_17 other upstream 5463 13325993 ~ 13326084 (-) True trnar-ucu_17
trnar-ucu_18 other upstream 7522 13328052 ~ 13328143 (-) True trnar-ucu_18
TU444599 other upstream 118689 13439219 ~ 13439535 (-) True G375428

Expression Profile