RNA id: TU444627


Basic Information

Item Value
RNA id TU444627
length 268
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G375455
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 13498643 ~ 13505565 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtttagtttaTAGAAATCGAGTTCTGCAGCGCTTGTATAATTTACACCTCCTTTCTGCATCACTTGAAGTGGCTTTGAACAGAACAATCTGCcacatgaataaatgtaaagtcCAGTTGCCTTGACCTGcattaaaagcatttaaacacaTGGTCATACTATACCGGCTGAACCAGAAACCTACAGAACAGCAAAGAAAAGTACAGGATTATTTCACGGTAAAAATGGGATTAGTAGAGACTActggagaagaggagagaaggagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU444588 lncRNA downstream 81547 13416822 ~ 13417096 (-) True G375420
XR_003403790.2 lncRNA downstream 97218 13386832 ~ 13401425 (-) True LOC113537738
XR_003403791.2 lncRNA downstream 98730 13386832 ~ 13399913 (-) False LOC113537738
TU444472 lncRNA downstream 227022 13267882 ~ 13271621 (-) False G375329
TU444471 lncRNA downstream 227438 13267882 ~ 13271205 (-) True G375329
TU444638 lncRNA upstream 14998 13520563 ~ 13520923 (-) True G375466
XR_004577284.1 lncRNA upstream 323616 13829181 ~ 13830571 (-) True LOC117596119
TU444799 lncRNA upstream 326903 13832468 ~ 13834980 (-) True G375614
TU444800 lncRNA upstream 330533 13836098 ~ 13836533 (-) True G375615
XR_004577299.1 lncRNA upstream 347511 13853076 ~ 13860774 (-) True LOC117596131
XM_026931655.2 mRNA downstream 20385 13476472 ~ 13478258 (-) True cldng
XM_026931688.2 mRNA downstream 71489 13417325 ~ 13427154 (-) True creb1a
XM_026931689.2 mRNA downstream 71490 13417325 ~ 13427153 (-) False creb1a
XM_026931800.2 mRNA downstream 149809 13331029 ~ 13348834 (-) True cd99
XM_026931799.2 mRNA downstream 149817 13321263 ~ 13348826 (-) False cd99
XM_034300257.1 mRNA upstream 362123 13867688 ~ 13902247 (-) True lmo7b
XM_034300254.1 mRNA upstream 362123 13867688 ~ 13902245 (-) False lmo7b
XM_034300256.1 mRNA upstream 362123 13867688 ~ 13902245 (-) False lmo7b
XM_034300255.1 mRNA upstream 362123 13867688 ~ 13902245 (-) False lmo7b
XM_034300253.1 mRNA upstream 362123 13867688 ~ 13902245 (-) False lmo7b
TU444599 other downstream 59108 13439219 ~ 13439535 (-) True G375428
trnar-ucu_18 other downstream 170500 13328052 ~ 13328143 (-) True trnar-ucu_18
trnar-ucu_17 other downstream 172559 13325993 ~ 13326084 (-) True trnar-ucu_17
trnar-ucu_16 other downstream 173035 13325517 ~ 13325608 (-) True trnar-ucu_16
trnar-ucu_15 other downstream 174470 13324082 ~ 13324173 (-) True trnar-ucu_15
XR_004577357.1 other upstream 477180 13982745 ~ 14016085 (-) False pibf1
TU445045 other upstream 521729 14027294 ~ 14030879 (-) True G375826
XR_003403797.2 other upstream 532166 14037731 ~ 14037862 (-) True LOC113537775
XR_003403796.1 other upstream 532963 14038528 ~ 14038598 (-) True LOC113537774
XR_003403798.1 other upstream 533289 14038854 ~ 14038986 (-) True LOC113537776

Expression Profile