RNA id: XM_026910856.2


Basic Information

Item Value
RNA id XM_026910856.2
length 1787
RNA type mRNA
GC content 0.49
exon number 8
gene id fgb
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 125530 ~ 130361 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAAGCATACACAGCTGAACAGCAGGGTGACGATCTGTGTTAAAGCGTCCTGCTCTTTACAATGAagcttctcctcttcctcagtgtgtgtgtgtgtggagcgcTGGTTCAGGCGCATACTGAttatgatgatgaagatggtgtagAGGCGCCATCGCTGcccAAAGTGGAAGTCAAAGATCCTCGAGGTCACAGGCCTCTTGCCAGAGGTCGTGAGGTTTACACGCCTGTCGCTGCTCCACCTCCTGTTAGCGGACGAGGACGTTACGGACCGCGACCCACTGCAACAACAGTGAGACAGCCtcaggaggagaagaaggaaatTCCTGACAGTGGAGGATGTTTACATGGTTCAGAGACAATgGGTGTACTCTGTCCGACAGGCTGCGAACTGAAAACCACTTTGCTGAAGCAGGAGCGTGACGTTACACCTACAGTGGCTCAGCTCAAGAGAGACGTGGAAAATCTGTCACAGACCTCCAACTCTGTCTACAAATATGTGGAGGATCTGACCACAGAGgtcacagagagacagagaatcaACAACGGTAATGACGAGTTAGTTAGTCAGTACACAGATGACCTGGAGGGCCAGCATGCGTATGTGAAAGAAACAGTGGATGTCACTTTtccacaaaacattaaaatcctGCAGGGAGTCCTGGAGAAACTGCGGGAGAAGATTCAGCGTCTGGAGAAGGCTGTCACTTCTCAGAGGGAGAGGTGTGCTGAACCGTGTGTAGTGTCCTGCCCGATTCCGGTGGTGTCTGGAAAAGACTGCGAGGATGTTTTCAGGAATGGAGGAGAAACTTCTGAGATGTATCTGGTGCGCCCAGAATCCTCACAAGCAGCATACAAGGTCTACTGTGACCAGACAACCCAGAACGGAGgCTGGCTGCTTATTCAGAACCGTTTGGACGGTAGCGTGGACTTCGGCCGGCGATGGGATGAATACAAGAAAGGTTTTGGAAACGTTGCGTTTGATGTTGGGAAAGGTTACTGCGAAACTCCTGGCGAGTACTGGCTCGGTAATGACCGCATCAGTCAGATCACTAAGACGGGCCCAACTGAAGTCCTGATCGAGATGCAGGACTGGACAGGCACGAAGACATACGCTCAGTACCAGCAGTTCACCGTCCAAGGCGAGGCCACGAACTACATCCTGGCAGTGGATAAATACTCCGGCACGGCGGGAAACACCTTCCTCACCGGCGCAACAGAGCTGTTTGGTGTAAATCGCACCATGACTATCCACAACGGCATGATGTTCAGCACCTACGACAGAGACAATGACCGATGGGTACCTGGAGATCCGTCTAAGCAGTGTTCACGAGAAGATGGTGGTGGATGGTGGTACAACGCCTGCCATTCAGCCAACCCTAATGGCCGATACTACTGGGGCGGACCGTACACGAAAAACATGGCCAAACACGGAACAGACGACGGCATCGTGTGGATGAACTGGAAGGGCTCGTGGTACTCACTCAAGGCCATCAGCATAAAGATCAGACCCTACTTTGCtcagaaataacacacacacacatacacacacactcttcctgtGTGAAACAAGTACTCTTATTCAGCAAATGCCattttggaaaaagaaataagaatggaaaaaaagaaatagatgaTGATatcagtgaaatgaaaagatGATATCAGTGAAATATGAAGATAAGAACTGCATCAACAAACCTGCTTatgttcaaaataaaatgtattctgTGTGAACATTATATTGTGTTTGAATCTGATCATCTCAGTAAACTGtagaacatttt

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0051258 protein polymerization biological_process
GO:0007165 signal transduction biological_process
GO:0005577 fibrinogen complex cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K03904 FGB; fibrinogen beta chain

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436777 lncRNA upstream 48821 179182 ~ 184646 (-) True G368685
TU436781 lncRNA upstream 55473 185834 ~ 193914 (-) True G368689
TU436775 lncRNA upstream 89023 219384 ~ 221756 (-) False si:dkeyp-75b4.8
TU436806 lncRNA upstream 113816 244177 ~ 244780 (-) True G368713
TU436824 lncRNA upstream 151078 281439 ~ 281903 (-) True G368725
XM_026910880.2 mRNA downstream 11790 92135 ~ 113740 (-) False LOC113524573
XM_026910879.2 mRNA downstream 11790 92135 ~ 113740 (-) False LOC113524573
XM_026910882.2 mRNA downstream 11790 92135 ~ 113740 (-) False LOC113524573
XM_026910881.2 mRNA downstream 11790 92135 ~ 113740 (-) False LOC113524573
XM_026910884.2 mRNA downstream 12269 92135 ~ 113261 (-) False LOC113524573
XM_026910892.2 mRNA upstream 24120 154481 ~ 161981 (-) False rnf175
XM_034300347.1 mRNA upstream 24120 154481 ~ 161828 (-) True rnf175
XM_034300206.1 mRNA upstream 89083 219444 ~ 227102 (-) False si:dkeyp-75b4.8
XM_034300207.1 mRNA upstream 89412 219773 ~ 227102 (-) False si:dkeyp-75b4.8
XM_026912253.2 mRNA upstream 98087 228448 ~ 234976 (-) True pdia2
XR_004577324.1 other upstream 72293 202654 ~ 227102 (-) True si:dkeyp-75b4.8
TU437316 other upstream 781192 911553 ~ 915683 (-) True G369125
TU437448 other upstream 1145660 1276021 ~ 1276813 (-) True G369242
XR_004577318.1 other upstream 1411001 1541362 ~ 1599744 (-) False nrp2a
TU437816 other upstream 1661826 1792187 ~ 1795224 (-) True G369586

Expression Profile