RNA id: XM_026910881.2


Basic Information

Item Value
RNA id XM_026910881.2
length 3025
RNA type mRNA
GC content 0.46
exon number 20
gene id LOC113524573
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 92135 ~ 113740 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACTGTATATATTGTGGCACCGACTGCGATACTTTGACCTATAATTTTCACCATcgcttttttctgtttattttaggGAAAAAGTTAATAAAGTAAAAGTTTTTGTAAGTATGTATGTGAGAATGAAGCATCTGATCCGCGGTGcccgagtgtgtgtgctgactcGGTGCTCAGTGCGCATGTctccgagtgtgtgtgaatatcatTATAATTCACAGAGTTCATGCAGCAGCTCCCAGATCAGCTGTGGGAAGAGATCCTGCAGCTCAGGGGTGCGCGTGGGCTGCGCCTCGGGCTTCTGGGGAGATACTGCTGCATCAGGTGTTTAATTCCTCATATACCACTTTCAGTAGCTCTGTGCGCTTGAGCCCCGCGGTGGCCTGGAGTGCAGAGAGCTCACCACTGGAGTGTCTGATGATCAGAGCGAGGTTCAGCAGCAGTGGTGAAAGTGCTGCAGACTGACATTAAAGTTCCCCTGAAACTGGATCTTTCATTTCACGCAGCTGATCTCGTGCCTAATCCTCAGATTCCTGAGCCAGGTCCTGGAGGAACCCCGTCTATGTCCTGCACAGTTTAGAGTTCTCTTGCtctaaaagacacacacacacacacacacacacacacacacacacacacacacacttcagctcaTGATTGTtggttaattagctgattaattgGAGCATGTGCTTTTTTATGTACTCATTATTTGTCTCATGTTAaatcagttcagtgtgtgtgtacacctcTAATGACTGAAGACTGTAAGGTCTGTCAGAAGTACCGATTTATAAACAAAACCCATTTCTGGTACTACTTTAGAATATCTGCAGTGATATAAAGGAGTGCTTAAACCTTCTCTCTTCACATGATGACCTTGTAAGGATGAAAAACATCTGTATTAGCCATAAAGGGTAATAAAACAAGACATACTATACTGTTTATTATGTAAGTTTAACGTTATTCCTCTTCATGCTCCTCTGCAGTTCCTCAGCTTATACATGGTGGGAAGCTGGACTTTCTTGTGTTTGATTATCTGTCGGAAATTACCATGTCCCTCCTCACGGCTGCTAAAGCTAAGACTCCTAATATGGGATACGCGCCTGATTTCGTTCTTGCTGCCATTTCTCCATATATCAAAGAAATCGGCCAAAAAGGTATTCGTGTGGTTAGTAACGCTGGTGGTGTGAATCCTCTCGCATGTGCAGCTGCTATACAGGAAGTAGTGCAGAAAGCTGGGCTCAGTTTGAAGGTTGCCGTGGTAACCGGTGATGATCTAATGCCTCAGaaAGACTCTCTGAATATGTTGAAGATGGCTGATACACAAGAAAACAAACCACTTCCCAAAACCGTAAACAGTATGAACGCATATCTGGGTGCGGTCCCCATAAAGCGCTGTTTGGATCTGGGGGCTGATATCGTCGTTACTGGCCGGTGTGTTGACAGTGCgctggtgcttggacccctgatGCATTCATTTGGCTGGGATCAGAATAACTTTGACCTCTTGGCTGCTGGAAGCCTCGCAGGTCACCTGATAGAGTGTGGAGCCCAAGTGACCGGTGGCATTttcactgactggcacatggtTCCTGACTGGGATAACATGGGCTTCCCAGTGATCGAATGTTCCTCTGATGGCTCCTTCACTTTGTCCAAACCTCCCAGAACTGGTGGTCTGGTGTCATTCGGTACAGCAGCAGAACAGTTAGTGTATGAAATAGGAGATCCACGTCATTACCTCCTGCCTGACGTCACGTGTGACTTCTCACACGTCACCATTACTGAGATTCCAGGTGTTGAAGGAGGAGCAGTGCGAGTGGGTGGAGCCAGAGGATCACCACCATCAGGTGACTACAAGGTCTGTGCCACATATATGGATGGTTTCAGAGCGACAGCGGTTTGTCCTGTAGCCGGCCCTCGAGCTGCACAAAAAGCCAGAAAGACCGCAGAGAGCATTATCAAAAGGACCAGGCGAATGTTCAGACAGCTGGGAGTGGAGGATTACAGTGATGTGAATATTCAGGTTCTGGGTGCTGAGGATACGTACGGACCTCACGCACTCAACACCGTGAATCCTACTCAAATATATTTGGTGCAGGATCTTCGGGAAGCGGTGCTGTGGATGGCTGTCCATCACAGGCAGAAGAAAGCTCTTGAGCTTTTCTCCAGGGAAGTGGCTCCAGCAGGAACTGGCATGGCTCCTGGACTCACAGGAATCGTGGGAGGCAGACCTCGAGTGTCTCCTGTGCTGAAGCCTTTCTTCTTCCTGCATCCTAAAGCAGACCTGAAGGTGAACATCCATCTTAATGGAGAGTTGATAGAGACGTACAGAGAGACGGAGTGTTCTTCACCTGAAGGACTTTACACATCCTCTCACCTCCCAGAGCAAAATCTTTACATTCCTACAGACTTGCCCAGCGGTCCTTGCAGCTACAGACTGGAAGACTTGGCTTATACACGAAGTGGAGATAAAGGAGACTCTGCAAATATTGGAGTTATAGCAAGACATCCACTTTACTTTCCGTACCTGAAGAAGTTTTTGACTgctgaagtggtggagaaaTTCTTTCAGCACCTGATTAAGAAGGAAGACGGCGATCTGCCCTCAGTGAGCCGGTTCGAGTTGCCTGGTGTTTGTGGTTTAAACTTCCTGATCCGCAATTCActtggaggaggaggtgtggcaTCTTTAAGAAGTGAccctcagGGAAAAGCTTATGGCCAGATGTTGCTGGACTACAGACTGACGGGTCTACCTGAGCTCACCTCGCTGGTAGACTGAAGAACGATGATAATCTGaggcaataaaacacaaaaacttcATAGTGACTCACAGTGTGAAcaacacacagactgagagCTGAACTGAAGCAGCATGAGCTAATCGTTTTCTTATCCATATTATCGAAGTGTGCATGGAGCTTAAACAACTCTTATTACAATGCTAATAGAATTATTCTTCAACATTAAGCATTTCACATTAAACTCCACTCTGaatcacattaaatgttttcatattgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436777 lncRNA upstream 65442 179182 ~ 184646 (-) True G368685
TU436781 lncRNA upstream 72094 185834 ~ 193914 (-) True G368689
TU436775 lncRNA upstream 105644 219384 ~ 221756 (-) False si:dkeyp-75b4.8
TU436806 lncRNA upstream 130437 244177 ~ 244780 (-) True G368713
TU436824 lncRNA upstream 167699 281439 ~ 281903 (-) True G368725
XM_026910885.2 mRNA downstream 115 83803 ~ 92020 (-) True LOC113524574
XM_034300291.1 mRNA downstream 1092 83803 ~ 91043 (-) False LOC113524574
XM_034300290.1 mRNA downstream 1092 83803 ~ 91043 (-) False LOC113524574
XM_026910890.2 mRNA downstream 8345 78214 ~ 83790 (-) True lratb.2
XM_034299999.1 mRNA downstream 23818 59037 ~ 68317 (-) False rbm46
XM_026910856.2 mRNA upstream 11790 125530 ~ 130361 (-) True fgb
XM_026910892.2 mRNA upstream 40741 154481 ~ 161981 (-) False rnf175
XM_034300347.1 mRNA upstream 40741 154481 ~ 161828 (-) True rnf175
XM_034300206.1 mRNA upstream 105704 219444 ~ 227102 (-) False si:dkeyp-75b4.8
XM_034300207.1 mRNA upstream 106033 219773 ~ 227102 (-) False si:dkeyp-75b4.8
XR_004577324.1 other upstream 88914 202654 ~ 227102 (-) True si:dkeyp-75b4.8
TU437316 other upstream 797813 911553 ~ 915683 (-) True G369125
TU437448 other upstream 1162281 1276021 ~ 1276813 (-) True G369242
XR_004577318.1 other upstream 1427622 1541362 ~ 1599744 (-) False nrp2a
TU437816 other upstream 1678447 1792187 ~ 1795224 (-) True G369586

Expression Profile