RNA id: XM_026910892.2


Basic Information

Item Value
RNA id XM_026910892.2
length 3267
RNA type mRNA
GC content 0.42
exon number 9
gene id rnf175
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 154481 ~ 161981 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATTCCAGTCCTCGTTTCCGTGATAAGTATCTGTAGATCAGCGGtatgatgatgaaggtggtgATGAGGAGCAGTGCTCAGTATAGAGTCTGATGTCTGTAGTTAGATCAGATGACCGACTATGGCTGATCTTCACGCGCAGGAAGATCTTTCAAAAATGTCCTACAGAGAAAACTGGAAAGTACAGCACGAGAAACTGCACGTGAAGCACCGAGGCCATGAGGCCATGCACGCTGAGATGGTCCTGATCCTCATCGCCACGCTGGTGGTCGCTCAGATCGTTCTGGTGCAGTGGAAACAGAGACACTGCAGATCGTACACCttaGTGACACTCCTGCAGATGTGGGTGGTGCCTCTGTATTTTACCATAAAGCTGTACTGGTGGCGGTTTTTGTCCACATGGGGCATGTTCTCCGTCATCACCAGCTACGTCATATTCAGAGCCACACGCAAACCTCTGTCCGGGAGAACGCCCAGGATGGTGTATAAATGGTTCCTGCTCATTTACAAGCTGAGCTACGCTGTAGGTGTACTCGGTTACCTCGCCATTATGTTTACGCTGTTCGGATTCAACGTTTTCTTTAGGATCAGAGCGGAGGACTCGATGGATGTGGGCGTGGTCATGCTGTTCTACGGACTGTACTATGGAGTGATGGGACGAGACTTCGCTGAAATCTGCTCTGACTACATGGCGTCCACTATCGGGtattATAACATGGGTGGAATGCCGTCTCGGAGTCTGTGCCGTGATATATGTGCCGTGTGTGGACAGAAGACTTTAGTGGACGTGGACGAGGAGGGCGCCATCGAGGACACCTACCAGCTCTCCTGCAATCACATATTTCATGAGTTCTGTATTCGTGgctggtgcattgtgggaaagaaGCAGACGTGTCCATACTGCAACGAGAAGGTCGACCTGAAAAGAATGATGAACAACCCCTGGGAGAGGACACACGTCCTGTACGGCCAGCTTTTGGATTGGCTCAGATACCTGGTTGCTTGGCAGCCGATCATCATCGGTATTGTGCACGGGATAAATTTTTCACTTGGTCTCGAGTAAAGTGTCATTAAGCGTCTTTAAAAAGTGTGCAGTTGTTTAccgaattatttatttataaattatgaCTTAATGTAGGAAATGTCTTctgtagcattttatttatttgataaacaACATGGCAGCCTCGGACTTTATCAATTATAATAATTCTCAAAAACAAGTTACAgcaactgaaacacacacacacacacacacgcctcataAGTGGCCTTTATTACTCCTGTCGAAGcttattattgtgtattgtacactcttacaccacagtgctgtcgtattctggactctgattggtcagaaggtgttgattagttctctataacagcagctctgacagtagagcaggtttatattaatgcgctcgctctcataccttatcgtttctatagtaacggctcattcacagggacgcgtACAGCGGACGCTTTGCTGATGATAAACGGAATAAAAACGTGTAATGGTCGATgtgtagttttctgtaaggagacgtttatttaacattaatgtaaggagtctccagtgtcggcactttaaaaaaagggaggctggtgaggaagcgattgtttatagctgctgtaacgtaaagaagaacaggaactgacttgtttcaaagacgttccacgacattaaacgtaactataaacagataaaaagtctcgtgttgttgattaattgttggcaagttgctgtggtataagaggaataaaacacttccagacGTGCTGTTACAGCTCTGCATCACTCCAtcgctgattaatttcctaaaaCCGCACGGCTTTAAGTCTGTTCCTTAGTTACAGGTCGTTTAGTCGTAGCACAGAATCAGGACTAGCTTTTCTTCTGGATTTTGCTAATGAAGTCTGAGAAACGCAATATTTTACTCAGCTGCTTAATTACAGACATATCAAAGTTAAAGCGTCTGTCTTTACACACGTCTTTATTTAGCAAGACAGTTTTGTTAGTTAaaatagtgtttatttaaattgtgatgtgtgtgttattatgacATCATTTACAAATTGAGATTAACGTGCCATGGGAGTGTGATCACACTTTACCTGTGTTTCATACGATCCAGGTGTTGAGTTGTTTGGCGTTAAGGTGAAGTCAGTAGCGGAGTGTCGATTGCTGATTAGATGTCGCAGATCTCCTCAGTGTGTCGTACTTTGTGTTACGTTTGTGGATTTTTGTCACATGACTGTCATTATTTCTCAGAAATCTGTTCTGTAAGTTCGGAACAGCTCACTGTGACGGGATGCTGCTAAATCTGctggtttgtttgttggtttgcaTGAAATAATTCTCGTGTGATGTGAAAGTCGATTAGCTGAAGCGATAGTGTTGCATCAgaatcttatttatttgttaaaatgatttaaatttgCACTTTAAGAACATGATGTAGGTTCATAATAAATTGTGTTTCCATGTTTAAGTTGCTGCCGTTGCACATCACAGTATTACACACGTGCACACTAATGCCACTGTTTACTGCAGTTCAGGAATGTTTGTGCTTTTCCTGCTTTTTGTGCTGCTTCATTTGCgaagtgaaaatgaatgatgtTCACTCAAAAACCTGACTAAAGGTGTCAGTTGATTTAGTTGTATGATTTTCAggtttatagattatatattagAAATCAGGCTGGTGTGAGGCGCGTGTACGTCGCATTCATTCAAACTGATTTGtattttaactttaagtttttcttGGCCCAAACTAAAGTAGCCCAAAAATAATTGgcccaaaattaaaaaataattaattgagctgccagttcccacccatcAGTCCGCTCTCCTCTAACGTACGGCAGCTAGGAAAGCGccgtctgccctcttccacatacatgagctcacagacatccACGATTGGCtcgtgtcactgtgattgacagggagagagagtatgcccctcccacccagagaccaCGCACACAGATTTtgacatgaaaaacaaatgaatgtaaTGTACACGGCAACATGGTGCAGCAATCACAGCGTGCCagataaacaataataaaaaaacaaaaacagttaaaCTGCACTGGTGTGATTCAGTGAGATTCAGATCAGAGTGACGAGTGAGCTGAATAatctcttttatttcatttatttagtttattaatttaatttgatttatttggtttattaattttatttggtttgtttgttttatttgatttattttatttatatattttatt

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436777 lncRNA upstream 17201 179182 ~ 184646 (-) True G368685
TU436781 lncRNA upstream 23853 185834 ~ 193914 (-) True G368689
TU436775 lncRNA upstream 57403 219384 ~ 221756 (-) False si:dkeyp-75b4.8
TU436806 lncRNA upstream 82196 244177 ~ 244780 (-) True G368713
TU436824 lncRNA upstream 119458 281439 ~ 281903 (-) True G368725
XM_026910856.2 mRNA downstream 24120 125530 ~ 130361 (-) True fgb
XM_026910880.2 mRNA downstream 40741 92135 ~ 113740 (-) False LOC113524573
XM_026910879.2 mRNA downstream 40741 92135 ~ 113740 (-) False LOC113524573
XM_026910882.2 mRNA downstream 40741 92135 ~ 113740 (-) False LOC113524573
XM_026910881.2 mRNA downstream 40741 92135 ~ 113740 (-) False LOC113524573
XM_034300206.1 mRNA upstream 57463 219444 ~ 227102 (-) False si:dkeyp-75b4.8
XM_034300207.1 mRNA upstream 57792 219773 ~ 227102 (-) False si:dkeyp-75b4.8
XM_026912253.2 mRNA upstream 66467 228448 ~ 234976 (-) True pdia2
XM_034300401.1 mRNA upstream 72918 234899 ~ 244174 (-) True percc1
XM_034300280.1 mRNA upstream 100172 262153 ~ 277683 (-) True rgs11
XR_004577324.1 other upstream 40673 202654 ~ 227102 (-) True si:dkeyp-75b4.8
TU437316 other upstream 749572 911553 ~ 915683 (-) True G369125
TU437448 other upstream 1114040 1276021 ~ 1276813 (-) True G369242
XR_004577318.1 other upstream 1379381 1541362 ~ 1599744 (-) False nrp2a
TU437816 other upstream 1630206 1792187 ~ 1795224 (-) True G369586

Expression Profile