RNA id: XM_026912253.2


Basic Information

Item Value
RNA id XM_026912253.2
length 2021
RNA type mRNA
GC content 0.47
exon number 11
gene id pdia2
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 228448 ~ 234976 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGACTCGTCACCTTTAACACGTGTTTATCAGTGGTGTGAGGACAGAGCTTGAGAGCACTGCAGCCAAAAGCGTGTGAAATGAAGCCTGCATGCGCTCTGATCTTCGCTCTTCTCCTGCTGTGCACGAGGGCCGAGCCTGAGGCGGCTGAGGAGAATCCCGTCGCAGAGGACAAGAACGACACCGAGACCGAGAAGAAGGAAACGACAGATGAAATTACTGAGGAGAAACATGTCCTGGTGCTGCATGAGAAGAACTTTGCGAGGGCTCTGAGTGAGAACAAATACCTGCTTGTGGATTTCTACGCTCCGTGGTGTCGCCACTGTCAGGCCCTTGAGCCAGTTTACGCCGAAGCCGCAGCACAGCTGAAGAACGAATCCTCTCCTGTACGACTGGCCAAGGTCGACGCCACGGAGGAGAAGGAACTCGCTAAAGAGTTTGAGATCAATAACTTTCCAACACTAAAATTGTTTGTGGAAGGCCGCAGACAGAATGCCACAGAGTTTACAGGAAAGCGCAGTGTAAAGGGAATTATACAGTGGCTGCAGCGGCGCACGGGACCGAGCGCTGCTCTTCTAAAGGATGACGAAGCCGCTCAGAAGCTACTCGACGCACACAACGTGGTTGTGGTCGGATTCTTTAAGgACTTGGAAGGAGAGAAAGCCAGAATGTTTAATGATGTTGCGCTGGACATAGTCAACGTTAACTTTGGCATCACAAGCAGTCCAGAGCTCTTCAAGAAGTACAAAGTAGAAAAGGAATCGGTCGTGCTTTTCAAAAAGtttgATGACCGGCGGGCAGACATGCCTCTGTCTGAGGAGGACAAGCTGGACAAGGATGAGCTCATCTCATTCATCCAGAGCAACAGCCTTGAGCTCGTTATTGAATTTAGTGAAGAGAATGGAGAGAAGATTTTTTCTAATAAAGTCCACAACCACCTTCTTCTGTTCATCAACACCACCACTGAGTCGCACACCGCTCTGCTGGACGACTACAGAGCCGTAGCCAGAGACTTTAAAGAGAAAatcCTGTTCATCATGATAGACATCACCACAGATGTTTCGCATGTGCTAAATTATTTCGGTCTGTCTGCGAGTGAAGCTCCGGCGCTCCGTTTCATCAACACCGACACGCTGAAGAAGTTCGCCATGGCAGAAGCAGCCATCAACAAGGACACGCTGAAAACGTTCtgtcaggatgtgctggatgGCAAAGTCAAGCCTCATTTGAAGAGTGAAGACATTCCTGAGGACTGGGATAAGAATCCTGTCAAAGTCCTTGTGGGAAAAAACTTCGAACAGGTCGCCTTTGATGAGACCAAGAACGTCTTTGTGGAATTCTATGCCCCTTGGTGTGGCCACTGTAAGGAACTTGCCCCTGAGTGGGAAAAGCTGGGGGAAAAGTACAAGGACCATGAAAACATCATCATCGCCAAGATGGATTCCACGGCCAATGACGTCGAGGAGGTGACGGTGCAGGGTTATCCCaccctgaaatattttccagCAGGATCCGAGAGGAAGGTGATTGATTATAACGGAAATAGGGATCTGGAAACGTTTGTTAAATTCCTGGATAATGGTGGAGTATTGCCAGAGGAAGAAGACGACGATGacgatgaggatgaagatgaagaccAGGAAAGCAAAGATGAGGTCTCAACAGAATCCATAGAAGAATCAGAGAAACCCTCTAATGGGTCCAGCGGCAAAGACGAGCTCTGAAAACATCCCACACATTAATTAATGCTGATTCAGATCTGAGTGGAGCTACTGAAACTGAATATGCTCAGTACTAGCTGTTTTAAGATTCAGATTCAAGAGTTTGTTGTCATATGCACAGTAAAACAGACAGTTACACTGTtctgataaacacacatttaacacacgTTCCATTCAGTGTCAGTCATCTGACTCGGCACTGAACCTTTCACATGGGAACCAAAATGTTGAGGAAATGCATCAACCATGTAAAATTAATTGTTTGtcataaaatgattaaagaacACCGGCTGGTCTAAAG

Function

GO: NA

KEGG:

id description
K09581 PDIA2; protein disulfide-isomerase A2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436775 lncRNA downstream 6692 219384 ~ 221756 (-) False si:dkeyp-75b4.8
TU436781 lncRNA downstream 34534 185834 ~ 193914 (-) True G368689
TU436777 lncRNA downstream 43802 179182 ~ 184646 (-) True G368685
TU436806 lncRNA upstream 9201 244177 ~ 244780 (-) True G368713
TU436824 lncRNA upstream 46463 281439 ~ 281903 (-) True G368725
TU436801 lncRNA upstream 49905 284881 ~ 289879 (-) False pmm2
TU437043 lncRNA upstream 343617 578593 ~ 581860 (-) True G368903
TU437049 lncRNA upstream 356276 591252 ~ 592079 (-) False rasd3
XM_034300206.1 mRNA downstream 1346 219444 ~ 227102 (-) False si:dkeyp-75b4.8
XM_034300207.1 mRNA downstream 1346 219773 ~ 227102 (-) False si:dkeyp-75b4.8
XM_026910892.2 mRNA downstream 66467 154481 ~ 161981 (-) False rnf175
XM_034300347.1 mRNA downstream 66620 154481 ~ 161828 (-) True rnf175
XM_026910856.2 mRNA downstream 98087 125530 ~ 130361 (-) True fgb
XM_034300280.1 mRNA upstream 27177 262153 ~ 277683 (-) True rgs11
XM_034300321.1 mRNA upstream 49887 284863 ~ 289908 (-) True pmm2
XM_026929006.2 mRNA upstream 117477 352453 ~ 408289 (-) True elfn1b
XM_026929184.2 mRNA upstream 283628 518604 ~ 525065 (-) True uncx4.1
XM_034299924.1 mRNA upstream 309282 544258 ~ 558212 (-) False chtf18
XR_004577324.1 other downstream 1346 202654 ~ 227102 (-) True si:dkeyp-75b4.8
TU437316 other upstream 676577 911553 ~ 915683 (-) True G369125
TU437448 other upstream 1041045 1276021 ~ 1276813 (-) True G369242
XR_004577318.1 other upstream 1306386 1541362 ~ 1599744 (-) False nrp2a
TU437816 other upstream 1557211 1792187 ~ 1795224 (-) True G369586
XR_003403632.2 other upstream 2331781 2566757 ~ 2574471 (-) False LOC113535702

Expression Profile