RNA id: XM_026928789.2


Basic Information

Item Value
RNA id XM_026928789.2
length 2345
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC113535480
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2797268 ~ 2804129 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgagagcaggaAAATGGCGGAGGCCAGTATTTTACATCATATTTCAGTAGATCAGTTCAGTTGTCCCTTGTGTCTGGATCTCCTGAAGGATCCGGTGACTATCCCCTGTGGTCACAGTTACtgtaaggtgtgtattaatgacTGCTGGGATCAGGAGGATGAGAAGGGCATctacagctgtcctcagtgcagaGACACTTTCACTCTGAGGCCTGTTATAGGCAGAAACAACATGCTggctgaagtggtggagaaaTTGAAGAAGATTGAAGTccaagctgcttctcctgctcactgttacgctggacctggagatgtggagtgtgatttcTGCACTGGGAGAAAACTCAAAGCCATCAAGTCCTGTCTGATGTGTCTGACTTCCTTTTGTGAAACTCATCTTAAACCCCATCTTGAACTTCCTGCTTTGAAAAAGCACACCTTAATCGAAGCCTCCTCAAAACTCCAGGAGAAGATCTGCTCTCAACATGACAAACTTATGGAGATCTACTGTCGTACTGACCAAAGGTGCATTTGTTCTTTGTGCATGTTGGATAATCACAAATGCCACGATGCTGTATCACTTTCAGCAGAGAGAACTGAGAAACAGAGTGAGCTAAAGAAGGAGCAGATGAAATGCCAGCAGAGaatccaggagaagcagaagaaggtgcaggagctgaaacaggcTGTGAACATGATTAAGTCCCATGCTCAGACAGCAGTGGAGGACAGTGAGATTATCTTTACTGAGATGATCAGCTTCATGGAGAAAAAGCGCTCAGAGGTGACGgagctgatcagagctcaggagaaggCTGAAGTGCGTCGAGCTGAACGACTCCTGgagcaactggagcaggagatcACTGATCTTAATAGGAGAGTCACTGAGAtggagcagctttcacacacacacgatcacatccACTTCTTCCAGagtttccggtctctctgtgtctcttctgGACGTGAGGATTCACCCAGCATCACTGTCCATCAACATCTCTCATTCGATGGAGTGAGGAATTCTCTCTCAGATCTGAAAAAGCGATTCGAGGAATTCTGCAAGAAGGAATTCAACAAAATCCCTCCACATGaactcagctacaccTGCTTCCTTATCCTCTTTTCGCACACTCCACGAGAAGctggcaggggtggtggtacagCTGCAGCAGTTCAGAAGATTTCACCCTCAGAGCCAACGAGCagagaagattttctgaaatatttctgtTATCTGACTCTGGATCCCAACACAGCAAATCATTACCTTCATCTGTCTGAGAAGAACAGAGTGGTGACATGCAGTCTCAAAAAGCAGCTGTACTCTGATCTTCCAGAGAAGTTCGACTCCTGTAGTCAGGTGATGTGTAAGGAGAGTTTATGTGGACGCTGTTACTGGGAAGTGGAGTGGAGAGGTGTTGTGTCCATCTCAGTCTCCTATAAAGAGATCAGGAGGAAAGGAGCGGGTAAAGAGTGTGAGTTTGGACGAAACAGTCAGTCTTGGAGTCtgtgcttttcttctttttcttcctctctctctttctatcacgACGACATGAAAACTGAGCTTGGAGTTCCATCATCCTCCagaataggagtgtatgtggatcaGAACGCAGGAAGtctgtccttctacagcgtCTCTGACACAATGAGGCTTGtccacagagtccacaccacattcactcagcctctaTACGCTGGGTTTGGGGTTTCTGGAACTGTGAGGTTGTGTGACCCAAAATAACAGTAGATGAAAAATTCTGGCTTTTTTCCTCATTGTTCCTCAGTTGTGATAAAACTATAACTTTAACGCGATAAACGTTTAAACATTGGGTTTAGACTCGGTCTGGGATCATCAGCTACACTGTTGTACagaataaaactattaaaaaggTGAACACTTTGTTTAGCTCTGCTGTGTTGAAATTACACTGTAAGTTAAAAATAACGAAACTGATCTTAGTTTGAGTGAGATTACTCCTACAGTAAAGAgtgctgtttttaattaaattgatgccacagcatctcagaaAGACATCCCGagtggagagaaaaacacagcagggACCGCAACTCATCCCTCCACGAGGCCCATGTTATCATCCACAATGACAGCTAAGGTGACTTTTTACTATTAACTTCTCAAACATCTCAAGAGATATTGTGTCTACAAGTACAGGCCACGAACCATAACAAAATTACATCTCTGAAACAttcaagaaaaagaaggaaaacagaaaacaacattGTGCTACTAAtaagtataattaaaaaaaaaaaggactagaCTGTTTTAGTTTTAGACTGTTTTGTTACAGCCAGTTTTTAAA

Function

GO:

id name namespace
GO:0048884 neuromast development biological_process

KEGG:

id description
ko04612 Antigen processing and presentation
ko05170 Human immunodeficiency virus 1 infection
ko05168 Herpes simplex virus 1 infection
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438351 lncRNA downstream 6592 2783272 ~ 2790676 (-) True G370028
TU438342 lncRNA downstream 7214 2771253 ~ 2790054 (-) False G370023
TU438346 lncRNA downstream 21873 2774882 ~ 2775395 (-) True G370024
TU438341 lncRNA downstream 22633 2772626 ~ 2774635 (-) True G370023
TU438290 lncRNA downstream 102691 2694149 ~ 2694577 (-) True G369988
TU438334 lncRNA upstream 14474 2818603 ~ 2821314 (-) True G370019
XR_004577338.1 lncRNA upstream 42251 2846380 ~ 2853211 (-) False LOC117596167
XR_004577337.1 lncRNA upstream 42251 2846380 ~ 2853208 (-) False LOC117596167
TU438470 lncRNA upstream 145292 2949421 ~ 2984930 (-) False G370127
TU438468 lncRNA upstream 160139 2964268 ~ 2984930 (-) True G370127
XM_034299928.1 mRNA downstream 26611 2768629 ~ 2770657 (-) True LOC113535758
XM_026928808.2 mRNA downstream 29775 2758969 ~ 2767493 (-) True tuba8l2
XM_026929212.2 mRNA downstream 40031 2747268 ~ 2757237 (-) True stk16
XM_034300320.1 mRNA downstream 40138 2749928 ~ 2757130 (-) False stk16
XM_034299942.1 mRNA downstream 68573 2718057 ~ 2728695 (-) True atic
XM_034300419.1 mRNA upstream 4188 2808317 ~ 2811609 (-) True LOC113535756
XM_026928792.2 mRNA upstream 19864 2823993 ~ 2827600 (-) True LOC113535483
XM_026928791.2 mRNA upstream 29484 2833613 ~ 2838789 (-) True LOC113535482
XM_034300420.1 mRNA upstream 70779 2874908 ~ 2892085 (-) True LOC117596192
XM_026928711.2 mRNA upstream 278941 3083070 ~ 3170485 (-) True gpc5a
XR_003403632.2 other downstream 222797 2566757 ~ 2574471 (-) False LOC113535702
TU437816 other downstream 1002044 1792187 ~ 1795224 (-) True G369586
XR_004577318.1 other downstream 1197524 1541362 ~ 1599744 (-) False nrp2a
TU437448 other downstream 1520455 1276021 ~ 1276813 (-) True G369242
TU437316 other downstream 1881585 911553 ~ 915683 (-) True G369125
TU438365 other upstream 39083 2843212 ~ 2853211 (-) True LOC117596167
XR_003403643.2 other upstream 1653306 4457435 ~ 4457541 (-) True LOC113535829
XR_004577365.1 other upstream 1655188 4459317 ~ 4459423 (-) True LOC117596196
XR_004577366.1 other upstream 1657080 4461209 ~ 4461315 (-) True LOC117596197
XR_004577367.1 other upstream 1658979 4463108 ~ 4463214 (-) True LOC117596198

Expression Profile