RNA id: XM_026928792.2


Basic Information

Item Value
RNA id XM_026928792.2
length 2682
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC113535483
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2823993 ~ 2827600 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAGTATTGAAACAACTTTTTAGCATTTGAAACCATGTAGAcagagtctctctctccacccccTTTTTCTCTACTTATattagagaaaaagaaactgatCATTGAGTGTTactctctgtttctcagtgtgtgagtgcaggagCATGGCCGAAGCTTTTATCCCAGTATATCAGGATCagttcagctgtccagtgtgtCTGGATCTCCTGAAGGATCCAGTGACAACTCGTTGTGGTCACAGTTACtgtaaggtgtgtattaatggctGCTGGGATCAGGAGGTTGAGAAGGGAGTctacagctgtcctcagtgcagaGACACTTTCACTCCCAGGCCTGTTCTACTCAGAAACAACATGCTggctgaagtggtggagaaactgaagaCTGAAGTTcaagctgcttctcctgctcactgttacgctggacctggagatgtggagtgtgatttcTGCACCGGGAGAAAATATAAAGCTGTCAAGTCCTGTCTAATCTGTGTGGCTTCCTTTTGTGAAACTCACCTTAAACCTCATTTTGAACTTCCTGATTTGAAAAACCACACCTTAATCGAAGCATCCTCAAATCTCCAAGAGAAGATCTGCTCTCAACATAACAAACTGATGGAGATCTACTGTCGTACTGACCAAACGTGCATTTGTCCTTTGTGCATGTTGGAGAATCACAAAGGCCATGACGCTGTATCACTTTCAGCAGAGAGCACTGAGAAACAGAGTAAGCTAAAGGAGGAGCAGCTGAAATTCCAGCAGAGaatccaggagaagcagaagaaggtgcaggagctgaaacaggcTGTGAACATGATTAAGTCCCATGCTCAGACAGCAGTGGAGGACAGTAAGAGGATCTTTACTGAGATGATCAGCTTCATGGAGAAAAAGCACTCGGAGGTGACGgagctgatcagagctcaggagaaggCTGAAGTGAGTCGAGCTGAACGACTCCTGgagcaactggagcaggagatcACTGATCTTAagaggagagtcactgagctggagcagctttcacacacacacgatcacaaCCATTTCCTCCAGagtttcctgtctctctgtgtctattCCGGATGTGAGGATTCACCCAGCATCACTGTCCATCAACAGCTCTCATTTGATGGAGTGAGGAATTCACTCTCAGACCTGAAAAAGCGATTCGAGGAATTCTGCGAGGAGGAATTCAACAAATTCCCTCCACATGCTGCAGCAGTTCAGAAGATTTCACCCTCAGAGCCAACGAGCagagaagattttctgaaatatttctgtTATCTGACTCTGGATCCCAACACTGCAAACTGTAAACTCTGTCTATCTGAGAAGAACAGAGTGGTGACATGCAGTGTGAGAAAGCAGTGGTACTCTCATCATCCAGACAGATTCGACTCCTATAGGcaggtgttgtgtaaggagagtgtgtgtggacgctgttactgggaggtggagtggGTAGATAGTGTGCACATCTCAGTTTCATATAGAAAGAtcaggaggaaaggagagggtAAGGAGTGTCGATTTGGACTCAACAGTGAGTCCTGGACTCTGTGctgttcttcttcctctctctctttctatcacagtgacattaaaaCTGAGCTCAGAGTTCCATCATCCTCCagaataggagtgtatgtggatcacagtgcaggaaatctgtccttctacagcgtCTATGATAAGATGAGGCTCAtccacagagtccacaccacattcactcagcctctaTATGCTGGGTTTGGGCTTTACTGCAAATCAACTGTGAGGTTGTGTGACCAAAAATAAGGGTAGATGAAAAATAcctgctcatttcctcattGTTCCTCAACTGTGGTAAAACGGTCCCATCTTCAATAACGTGATGTGGGGCATGCCCACGGCAGAAAAACAGCATTCCACAGAATGTGACAGCAGAAAGAGATATGCTGTTTCAAACACACTTCCTGATGTTTTGAAAAGTTGTGTCAAGTAATGTAAGCTCACCTTTCCCTCTAGCCTGGTAATGTAGTCTCACCCTTTCCTCTAGCCTGGTAATGTAAGCTTACTCTTTCCTCTAGAATGGTAAAGTAAACTCACCCTTCCCTCTAGACTGTTAAATCAGTACAAGGAAGCAATATTCCTTTGGTTAATAGTCACTTATATTACACATATGGTACTGACacatgataaaatgtttaaatgttaaagaagTTGTACATtatataaatctgtaattttcaaaaatgtagTGTGATCAAGGCTAAGTGTTATGATGTCCATTTAGTTTGTGAACCCCTGCTCTAAAGTGACCTATGTGATTATTCAAATGAGTTTCATATAAATATGTCTAATTTTATAAACAACAATCTGATTTTCCGCCTTCAAATATTAATTCAAATCTGTCTTGAGACCAAAGTATTTACACAAAGACAATTTTCACTATCgttcattttgtttaaagtaAAGAAGAATATTTTTGTAGGTGTGAACGCTCATAGCACACTGACACAGtagattaatatttaatattagatATTTACTGAGAATTATGATCTTAACTAATGACTCAGCACTTCTTCTGTCCTTCTGTATCAACTTCTGAGAAAacaagtaattaaaaacaaatgagaaaCTGAAAGCTTCAAGCACAAAAAACAGGTTTTCCTGTGTTTCCTGCATTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438334 lncRNA downstream 2679 2818603 ~ 2821314 (-) True G370019
TU438351 lncRNA downstream 33317 2783272 ~ 2790676 (-) True G370028
TU438342 lncRNA downstream 33939 2771253 ~ 2790054 (-) False G370023
TU438346 lncRNA downstream 48598 2774882 ~ 2775395 (-) True G370024
TU438341 lncRNA downstream 49358 2772626 ~ 2774635 (-) True G370023
XR_004577338.1 lncRNA upstream 18780 2846380 ~ 2853211 (-) False LOC117596167
XR_004577337.1 lncRNA upstream 18780 2846380 ~ 2853208 (-) False LOC117596167
TU438470 lncRNA upstream 121821 2949421 ~ 2984930 (-) False G370127
TU438468 lncRNA upstream 136668 2964268 ~ 2984930 (-) True G370127
XR_004577320.1 lncRNA upstream 211574 3039174 ~ 3052202 (-) True LOC117596157
XM_034300419.1 mRNA downstream 12384 2808317 ~ 2811609 (-) True LOC113535756
XM_026928790.2 mRNA downstream 19864 2797268 ~ 2804129 (-) False LOC113535480
XM_026928789.2 mRNA downstream 19864 2797268 ~ 2804129 (-) True LOC113535480
XM_034299928.1 mRNA downstream 53336 2768629 ~ 2770657 (-) True LOC113535758
XM_026928808.2 mRNA downstream 56500 2758969 ~ 2767493 (-) True tuba8l2
XM_026928791.2 mRNA upstream 6013 2833613 ~ 2838789 (-) True LOC113535482
XM_034300420.1 mRNA upstream 47308 2874908 ~ 2892085 (-) True LOC117596192
XM_026928711.2 mRNA upstream 255470 3083070 ~ 3170485 (-) True gpc5a
XM_034299954.1 mRNA upstream 784119 3611719 ~ 3618120 (-) True LOC113535432
XM_026928713.2 mRNA upstream 784119 3611719 ~ 3616892 (-) False LOC113535432
XR_003403632.2 other downstream 249522 2566757 ~ 2574471 (-) False LOC113535702
TU437816 other downstream 1028769 1792187 ~ 1795224 (-) True G369586
XR_004577318.1 other downstream 1224249 1541362 ~ 1599744 (-) False nrp2a
TU437448 other downstream 1547180 1276021 ~ 1276813 (-) True G369242
TU437316 other downstream 1908310 911553 ~ 915683 (-) True G369125
TU438365 other upstream 15612 2843212 ~ 2853211 (-) True LOC117596167
XR_003403643.2 other upstream 1629835 4457435 ~ 4457541 (-) True LOC113535829
XR_004577365.1 other upstream 1631717 4459317 ~ 4459423 (-) True LOC117596196
XR_004577366.1 other upstream 1633609 4461209 ~ 4461315 (-) True LOC117596197
XR_004577367.1 other upstream 1635508 4463108 ~ 4463214 (-) True LOC117596198

Expression Profile