RNA id: XM_026928797.2


Basic Information

Item Value
RNA id XM_026928797.2
length 7857
RNA type mRNA
GC content 0.50
exon number 33
gene id cacna1hb
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 1052390 ~ 1113599 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGAGCGAGTCAGCATGTTGGTGATTTTGCTCAACTGCGTCACACTCGGCATGTTCCAGCCATGTCAGGACCTGGAGTGTCACTCGGAGCGCTGCACCATCCTGCAGGCATTTGATGACTTCATCTTTGCGTTCTTTGCGGTGGAGATGGTGCTGAAGATGGTGGCTCTGGGCGTGTTCGGGCCGAGGTGTTACCTTGGAGACACGTGGAACCGCCTAGATCTCTTTATCGTCATGGCAGGaatgTTGGAGTACTCTCTCGATGGACACAACGTCAGTTTCTCTGCAATCAGAACAGTCCGAGTTCTCAGACCTCTCCGAGCCATCAACAGAGTTCCCAGTATGCGCATCCTGGTGACGCTGCTGTTGGACACATTACCGATGCTGGGAAACGTTTTGCTGCTATGCTTCTTCGTGTTTTTTATCTTCGGAATTGTTGGCGTGCAATTGTGGGCGGGGTTACTGCGCAACCGCTGCTTCCTGGATGACGATGCAAGAACGATGTTTAATCTCTCTCCGTCTTTGAGTGCTTACTACAGACCCGAAGACTCCGACGACGTCGCCTTCATCTGTTCAACCAATCGCGAGAACGGAATGCTGCGCTGCTCCGATGTCCCGCCACgcaaagtgggcggggcttactGCGAGCTAAACGCTCACAATGTCACGCACCCCGCTCCTCTAGAGCCCGCCCATAGGGGGTGTGTCAACTGGAATGCCTACTACAACAACTGCAGAGCGAGCGAACACAATCCGCACAACGGAGCCATCAACTTTGATAACATCGGATACGCGTGGATTGCCATCTTTCAgGTGATCACACTTGAAGGCTGGGTGGACATCATGTACTATGTCATGGATGCGCACTCCTTTTACAACTTCATCTAtttcatcttcctcatcatcGTGGGCTCCTTCTTCATGATCAATCTGTGCCTGGTGGTCATCGCCACGCAGTTCTCGGAAACCAAGCAGCGCGAGAACCAGCTGATGCGTGAGCAGCGAGCTCGCTTCCGGAGCAACGAGTCCACGCTGACTAGCTTGGCTGAGCCTGGCTCGTGCTACGAAGAAATTCTGAACTACCTTGGCCATCTTTTACGCAAGTTTTATCGCCAcgttattcatttttataacgACGTGTGGCGCAAGAGCAAGAGCGCTAACCTCGGGGAGTCCGCCACTGTGGGCGGAGTCAACGGACACTGGAGCAATAAGGAGGGGATTGAGCTGACCCGACACctctttcatcatcatcatcatcatcatcatcaccatcatcatcatcatcagcagcagcagcagcagcatcgcGTGGGAAATGGCACGGACGTCCCGGAAATGAAGGCGGTGCTTCTGAGCGGAGATAAATGCCTTCCCAAATACACTTCCTCGTTCCCCCTGACCGTGCACAGCCTCAAGGGTATCGGTGTGAACTACCCCACCATCCTGCCCCTGGCCTTCTTCACACACTCACGTGTTCACCCCAACTGCCCCAGTGCCCTCAAGACCAACACACGCATCCAAAACACCAACAAAACGCAGCAGCatggtgtgtaccCGGGTGTGTGTTcgagtgtgtgtacagaagcTGGCAGCAGACCGGCACCGTGCGAGCTTCCCACATGCCCGGTTTCTGCCCGCGAGGCCGACACACTCAGCTCCAACTCTGTCTGCGACTCAGACTCGGAGAAAGAGAGCGACCCGGAGCTGAAAAAAACGAGCTGGGAATCCGAGAGGAATTTCAGCGAGAAGCCGAAGAGGGAAAACTTCctcggagtgtgtgtgcggtgtgttAGAGCCGTGCTGAGGAGGATCGTGGACAGCAAGTACTTCAACAGAGGCATCATGATCGCAATCCTCATCAATACTCTCAGTATGGGAGTGGAGTACCATGaacagccTGCTGAGTTGACAGATGTGCTGGAGATCAGTAATATCgtcttcaccagcctctttgcCCTGGAGATGgtgctgaagctgctggcctgcgGTCCGCTCGGCTACATCAGCAACCCCTACAACATCTTCGACTtgatcatcgtcatcatcagTGTGTGGGAGCTCATCGGACAGGCGGATGGAGGTTTATCCGTCCTGCGCACCTTCCGTCTCCTCAGGGTCCTAAAGTTGGTCCGCTTCCTGCCAGCCCTGCGCAGGCAACTCGTGGTCCTGATGAAGACCATGGACAACGTGGCCACCTTCTGCATGCTGCTCAtgctcttcatcttcatcttcagTATCCTGGGCATGCATCTGTTCGGGTGTAAGTTCACGCTGCGTCTGGAGAACGGGGACACTATCTCGGACAGGAAGAACTTCGACTCGCTCCTTTGGGCCATCGTCACCGTGTTCCAGATACTAACACAGGAGGACTGGAATGTGGTGTTGTATAACGGCATGGCCTCCACGTCTCCGTGGGCGGCGCTTTACTTCGTCGCTCTCATGACCTTCGGTAATTACGTCCTCTTCAACCTGCTGGTGGCCATTTTGGTGGAAGGTTTCCAGGCTGAGggcGATGCTAGCAGATCAGAAAGCGACGATGATGCGTTCTCATCTGACTTTGACGACGAGGACAGGTTGAGAGAGCTGTTAAGCTCAGGTTCGGAGGCGAAGGTGCAGACGCTCCTGCCCATTTCTAACGGCCACTTGGAGCCCAGAGCCACCATGCCGCCGTACCACGCCTACACTACGGCCACGCCCAGAACCGAAGTGTCTCACGTCGACAACCAATCACTGCGCAGCAGCAACGCCTCCTACGAGCACCACGACCAGAAGTCGATGTCCAGTCTATGGGGGAGTCGCCGCTCTAGCTGGAACAGCCTCGGCCACGCCCCTAGCTTGAAGAGGCGTGGCCAATCAGGAGAGCATGAGTCGCTGCTATCGGGCGAAGACCGGGACAGTTTCGAAGACGACCAATCAGAGGAGGACAAGTCCAGCAGGACAGGCAGCTTGAGCAGAGTTTCGCATCTTGAGTCGTTCGATTTGCCAGAACTCCTACAAGTCCCGCCCATGCCACACCTCTACGGAGAATGCAACGGTAGATTGGACGGATCGTTTCCTTCCTCTCCGTACACAACGCAACGAGAGACGTCGCACGCACCTGCCGAGCAGGACGACGAGTCAGAAGAGAGTTGGTGTGTTATTCTGAAAAGGATATTGGAGCCGTACAAGCCTCAGTGGTGCAGAGATCACGAGGACTGGTCACTGTACGTGTTCTCACCTCAAAATAAGTTCCGTGTGCGTTGTCAGAAGGTCatcactcacaggatgtttgaTCACATCGTGCTGGTCTTCATCTTCCTCAACTGCATCACCATTGCGCTCGAGAGACCCGACATCCAGCCACACAGCATGgAGCGCGTCTTTCTCAGTGTGTCTAACTACATCTTTACTGTGATCTTCGTAGCTGAGATGACTGTCAAgGTGGTGGCCATGGGGCTGTACGTGGGTCCAGGCTCGTATCTGCAAAGCAGCTGGAATGTTCTGGATGGGCTGCTGGTGTTCGTGTCTATCGTGGATATCCTGGTGTCTCTGGCCTCATCTGGAGGAAACCGCATTTTGGGAATCTTGCGAGTACTGCGTCTTCTCCGAACGCTCAGACCGCTCAGggtgatAAGTAGGGCTCCTGGTTTAAAGCTGGTGGTTGAAACACTAATAACTTCACTGCGGCCGATTGGGAATATTGTGCTGATCTGCTGTGCTTTCTTCATCGTGTTTGGAATACTGGGAgtccagCTCTTCAAGGGAAAGTTTTATCACTGTGAAGGCTTCGACACCAGAAACATCACCAACAAGTCCGAGTGTCTGCAGGCGAATTACCGCTGGGTTCGCAGGAAGTACAACTTTGACAACTTGGGCCAGGCCTTGATGTCATTGTTTGTCCTGTCATCCAAAGACGGCTGGGTCAACATCATGTATGATGGATTAGACGCAGTGGCTGTGGAccaacagccCATAAGGAACCATAACCCCTGGATGCTGCTCTACTTCATTTCCTTCCTGCTGATCGTCAGCTTCTTCGTGCTGAACATGTTTGTGGGCgttgtggtggaaaacttccACAAATGCCGTCAGGaccaggaggaggaggaggcacgCCTCAGGGAGGAGAAGAGGCAGAGACGGCTGGAGAAGAGGCGcagaaaggcCCTCCAGAGACCGTATTATGCAGACTACTCTCCCGCCCGCCTCTACATCCACACCCTCTGCACCAACCACTATCTAGAcctcttcatcaccatcatcatcggCATCAACGTCCTCACCATGTCCATGGAGCACTACAACCAGCCCAagTATCTGGAGGAATCCCTGAAATACTGCAACTACGTCTTCACGCTGGTGTTTGTGATCGAGGCCATGCTCAAGCTGGTCGCCTTCGGCTTCAGGAGGTTCTTCAAAGACAGgtggaaTCAGCTGGACTTGGCCATTGTTCTGTTGTCCGTTATGGGAATTACGCTGGAGGAGATTGACCTGAATGCCTCATTACCCATTAACCCAACTATCATTCGCATTATGAGAGTGTTGCGCATCGCCCGAGTGTTGAAGCTGCTCAAGATGGCCACGGGAATGAGAGCGCTGCTGGACACGGTGGTCCAGGCTTTACCGCAGgttgGAAATCTGGGGCTTCTTTTCATGCTGCTGTTCTTCATCTACGCTGCTCTGGGAGTGGAGCTGTTCGGAAAACTCGaatgCTCGGAGGAAAACCCGTGTGAGGGTCTGAGTCGACACGCTACCTTCGAGAACTTCGGCATGGCGTTCCTCACCCTGTTCCGAGTCTCTACCGGGGACAACTGGAATGGAATCATGAAGgaCACACTGAGGGAGTGTAAGAGTGGAGATCGCTGCTTGAGTTACCTGCCGCTGTTTTCCCCGCTGTATTTCGTGACGTTCGTGCTGGTGGCGCAGTTCGTCCTGGTGAACGTGGTGGTCGCCGTGCTCATGAAGCACTTAGAGGACAGCAACAAGGATGCCTGCGAGGAGGCGGAGATGGAGGCGGAGCTGGAGGCGGAGCTACAGGCAAATCGGTGGCAGAATGCCGCCGCGTCTGCTGGTGAGGTTACTGGGTCTCCTGCGCTTCTACAGGGTGACGACCTTCAGGACAGAAACCTGCTCTCGGTCGGGAAGCCGTGCATATCGAGAATGCTGTCTTTACCAAACGACAGCTACATGTTTTACCCTAAAGCTGGACACAAACCCAGAGAGCAGCTCTTCTGCAAACAGCAGACCGTCGATCACAATACAGTCACAGGCTCGTCTCTGTCAGTGAAGTCGGAGTTGTGTGAATGGGAATCCCTACTGCAGGTTCCAGAGCCTCCGACTGGCCCCGCCTCTCATTTAGAGCCCCTCCCACCGCATCATGTGACCACACAAAAGTCTCTCAGGATGCTCCAAAGACAGGAGGCGATAAAGAGCGACTCTGTGGATTCCACCAGCCCTGGATCGATGGACAACTTATTTCTGCTCCACTCCGATTCTCTCAAAGTTCCCAGCGTTCCTTTGACCGGAGGCTCCGCCCCTTGTTCACCTCGAGCCACGCCCCCTATGTGTCGCAGTCGGACAGCCAGCGTCCAAACAAGCAGACGCGTGTACAGCCAGCGCAGCATTCCTTCACGcaggtctacacacacacagccggacacacacacacacacgtctaacacacacacctcggaCGAAGAAATCAGACAAATCCTATCATCCGTCGAGAGAAAAGACTCCGGTGTCCGGCTCCTCAGACGCAGCCACACCTTATCTCCACATGTCGCAGGCACTTTATGTTTGAAAAGCCAATCACAGCGAAGTAAAAGTACAGGAAGTGACCTTAGGAAGTACAACAGCATGGACTCGACCCATGGGGCGTGGTCAAACCAGCCGCGAAACAAGAGCGTGCCCTTTAAAACGCAAGGATCAGAAGCGTCTCTGTTGCGCAGGAAGCACAAAACGAGTCCACCTTGCGTTTCGCCTTCCACAGACCCGCCCATTTTCTCAGAAACTTCTCAGAGCGGCGTGGTTCTGAAAAGGCGGGCGCCATCGTTTGACTCCACGCTGCTCCGGGAGTCTTTGGATCTTCCTGATTCTCTGCTAGTTGCTAAGCCCCTCCCAcaacctcatttatcaatccatctgtctgtcccgTTTGAGCAATCGAACAATCGCGTTTCAGACGACGACCAATCATCACACTGTGTCCCAAACGACGCCTAAACAGAGGGTTATGGACCCGTTATGGGCGTGGCTTATTGTTATGGGTCGGGATGGTTCGTTCAGCCAATGAGGATTCAGACCAAAACATTTGATGCTAATGTGCACCTTTAAGCTAggaattctaaaaaaaaaaaaaaaaaaaaaagtaaaaaaaagaaaacagtaggGTGAAAATGAGTTATgcaattgtttgtttgtttgttttttccctaaTCATATTGATTAGAGATTtgagaatataaaaaatgatattGTGCAGCTGGATATTTGTTCTGAACTATAACAAAGCTCCCAGTAGCTCCCTACCCTACGTTCACACAAGCCCATGacaagtgggcgtggcctttaGTTCCTATGAGAAAtggtagtagctatatataacttctaaagctagctagttaatcGGTGTGAAAATcatttgtttgatttacatgttatgcGCTCGGCTTTGTACTAGCTTTGTTCTCGCTAACTatactagctacgtacacttACTAGAGGCACCAACAAACTCtgctccttccttccttttctagCATCGTactagctttatttttcttcgtaatgttTCTATACACGTTAAATAAGAGGATGGATATGAGAGGATAAGATGAAACTGGAGCACATCGCAAGTAGACGATTAAGTTGTGAGTGGGAAACTGAATCAGACTGGTCCGAGGAATCAATCCGgacaatcgtttggatttgtcgctttatcTAATTTGCgtaaaaaattaagaaatcgCATTTCAAAAGTCGCTTTGTTGCTGAAATCGCAGCTTCGCGTCACGTAGAAAACGGAAAACGCTCACCTGTCATTTTGTCGCTCGCTATTGTGAACGTAGGGTTACAATCACTTCATGGCAaatttctaaaatattagaatagTCATGAATCAGTTGTAATAGACACTTGTGTATTAGTATGGTGTCAATGGTTGTTATGGAAACCggatggaagaagaagaagaacgcAGATGAAGGTACGAGATCCTGAATACACTTTTTTGACGAGAAAGTCAGATACGTTTTTCTAAAACAGAGCAATGTTGACACACCTGTTTTTCTCAGATGAAATCTCAAACACACTGCATGGCAGAATCATCAGGACTGTACGCAGGAGGGCGGAGTTACTCTAGACTCGACAgagttaatatatttattgaatGCAGCACcatgatatttttataaaaaaaaagcccaagaGTTTTGCACGCACTCAAATGTTTTTTGacaaggaaatgtttttttttgttgttgttgttgttgttgttgttggttttctCTTGGTAATAACCATTTCTACAAAATATATTCAACCAAACACGCTTctgataattttattttttcccctcgtGCCACCCAGAGATTCTGAAGCAtggcataaataataataataattattatttattattaattattattattattattttccatagATTAGTTAATAGAGTAATGAACATTTCACCCAGAACAGATGTTCAGTGGCCTGTAAGTGCAAAACACgttaacaaaaatacaacaacaaactCGAAAACACATCAGCAGTAACCAGGTCCTTATTGAACGTCACGGGcttgttgttgtgttttgattttgccgtcatgttttttgttttgttgtgtttacaAATTTACTGTTAGTTTTTT

Function

GO: NA

KEGG:

id description
K04854 CACNA1G, CAV3.1; voltage-dependent calcium channel T type alpha-1G

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU437270 lncRNA downstream 103587 869887 ~ 948803 (-) False zgc:77849
TU437326 lncRNA downstream 177187 871589 ~ 875203 (-) True G369130
TU437066 lncRNA downstream 350411 701616 ~ 701979 (-) False prkcba
TU437096 lncRNA downstream 351102 701084 ~ 701288 (-) True G368944
TU437060 lncRNA downstream 379360 671640 ~ 673030 (-) True G368912
TU437443 lncRNA upstream 153107 1266706 ~ 1270364 (-) True LOC117596193
XR_004577363.1 lncRNA upstream 153482 1267081 ~ 1270425 (-) False LOC117596193
TU437449 lncRNA upstream 163474 1277073 ~ 1277650 (-) True G369243
TU437513 lncRNA upstream 251764 1365363 ~ 1375213 (-) True G369298
TU437512 lncRNA upstream 256535 1370134 ~ 1396598 (-) True G369297
XM_034299982.1 mRNA downstream 26369 987755 ~ 1026021 (-) True myo15ab
XM_026929168.2 mRNA downstream 65820 980870 ~ 986570 (-) True alkbh5
XM_034299980.1 mRNA downstream 73158 970792 ~ 979232 (-) True mief2
XM_034299979.1 mRNA downstream 73175 970792 ~ 979215 (-) False mief2
XM_034299981.1 mRNA downstream 77766 970792 ~ 974624 (-) False mief2
XM_034300142.1 mRNA upstream 54029 1167628 ~ 1190548 (-) True LOC113535776
XM_034300143.1 mRNA upstream 91165 1204764 ~ 1246041 (-) True slc5a10
XM_026928712.2 mRNA upstream 242124 1355723 ~ 1365906 (-) True LOC113535431
XM_034300032.1 mRNA upstream 398722 1512321 ~ 1518371 (-) False en1b
XM_034300031.1 mRNA upstream 398722 1512321 ~ 1518371 (-) True en1b
TU437316 other downstream 136707 911553 ~ 915683 (-) True G369125
XR_004577324.1 other downstream 825288 202654 ~ 227102 (-) True si:dkeyp-75b4.8
TU437448 other upstream 162422 1276021 ~ 1276813 (-) True G369242
XR_004577318.1 other upstream 427763 1541362 ~ 1599744 (-) False nrp2a
TU437816 other upstream 678588 1792187 ~ 1795224 (-) True G369586
XR_003403632.2 other upstream 1453158 2566757 ~ 2574471 (-) False LOC113535702
TU438365 other upstream 1729613 2843212 ~ 2853211 (-) True LOC117596167

Expression Profile