RNA id: XM_026928808.2


Basic Information

Item Value
RNA id XM_026928808.2
length 1583
RNA type mRNA
GC content 0.52
exon number 4
gene id tuba8l2
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2758969 ~ 2767493 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgtgtgtgtgcgcgcgcatatAAAAGGCAGCGTATGCGTCAGCAGCACATGTTCGTGTCTCACTTCATTACCCCATTGCAGGTACACAGTGAGAGGACATAACAGCAAAATGCGTGAGTGCATCTCCGTCCACGTTGGCCAGGCTGGTGTTCAGATGGGAAACACCTGCTGGGAGCTATACTGTCTGGAGCATGGCATCCAGCCTGATGGTCAGATGCCAAGCCAGAAGCCTGTTGGTGGCCATGATGACTCCTTCACCACCTTCTTCAGTGAGACTGGAGCTGGCAAATATGTACCTCGTGCCATCTTTGTGGACCTGGAGCCAACTGTCATTGATGAGGTCCGTACTGGTGCCTACCGCCAACTCTTCCACCCAGAGCAGCTAATCTCTGGTAAAGAGGATGCAGCTAATAACTACGCTCGTGGTCACTACACCATCGGCAAGGAGATCATTGACTCTGTCCTTGATCGCATCCGCAAACTGGCTGACCAGTGCACAGGTCTTCAGGGCTTCCTGGTCTTCCACAGCTTTGGAGGAGGCACTGGTTCTGGCTTCACTTCCCTCCTGATGGAACGTCTCTCTGTAGACTTCGGCAAAAAATCCAAGCTGGAATTTGCCATTTACCCGGCCCCGCAGGTGTCCACGGCTGTGGTGGAGCCATACAACTCCATCCTGACCACCCACACCACACTTGAGCACTCTGACTGCGCCTTCATGGTGGATAACGAGGCCATCTACGACATTTGCCGCAGGAACCTGGATATCGAGCGCCCATCTTACACCAATCTCAACCGGCTCATAAGCCAGATTGTGTCCTCAATCACTGCTTCTCTGCGTTTTGATGGTGCCTTAAACGTCGACTTGACCGAGTTCCAGACCAACCTGGTCCCATATCCCAGAATCCACTTTCCTCTCGCTACCTATGCACCAGTGATTTCTGCTGAGAAAGCTTACCACGAGCAGCTCTCTGTGGCCGAGATCACCAACTCCTGCTTCGAACCAAGCAACCAGATGGTCAAGTGTGACCCAAGGCATGGCAAATACATGGCCTGTTGCCTTCTTTATCGTGGTGATGTGGTGCCCAAGGATGTCAATGTGGCCATTGCAGCTATTAAGACCAAGAGAAGCATCCAGTTcgtggactggtgtcccacTGGATTCAAGGTGGGAATCAACTACCAGCCACCCACTGTGGTGCCTGGAGGCGACTTGGCCAAGGTCCAAAGGGCTGTGTGCATGTTGAGCAACACTACGGCCATTGCTGAGGCTTGGGCTCGTCTGGACCACAAGTTTGACTTGATGTACGCCAAGCGAGCCTTTGTGCACTGGTACGTTGGTGAAGGCATGGAAGAGGGTGAGTTCTCTGAGGCCAGAGAAGACATGGCTGCCCTGGAGAAGGACTACGAAGAGGTTGGGATCGACTCTtttgaggaagaggaagaaggagaagaataCTAAGATGGAATGGACGGCAGGAAAGCCACCAACTTCCTGCCATCATTACCAAAGAAAGCACAGTGCGCAATCTTGTGGTattgtcataaaatataaaaatacagctaCTAAATGTT

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07374 TUBA; tubulin alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438290 lncRNA downstream 64392 2694149 ~ 2694577 (-) True G369988
TU438282 lncRNA downstream 80699 2673555 ~ 2678270 (-) True G369980
TU438216 lncRNA downstream 193717 2564712 ~ 2565252 (-) True G369927
TU438221 lncRNA downstream 195432 2562804 ~ 2563537 (-) True G369930
TU438217 lncRNA downstream 196511 2560880 ~ 2562458 (-) True G369928
TU438342 lncRNA upstream 3760 2771253 ~ 2790054 (-) False G370023
TU438341 lncRNA upstream 5133 2772626 ~ 2774635 (-) True G370023
TU438346 lncRNA upstream 7389 2774882 ~ 2775395 (-) True G370024
TU438351 lncRNA upstream 15779 2783272 ~ 2790676 (-) True G370028
TU438334 lncRNA upstream 51110 2818603 ~ 2821314 (-) True G370019
XM_026929212.2 mRNA downstream 1732 2747268 ~ 2757237 (-) True stk16
XM_034300320.1 mRNA downstream 1839 2749928 ~ 2757130 (-) False stk16
XM_034299942.1 mRNA downstream 30274 2718057 ~ 2728695 (-) True atic
XM_026929079.2 mRNA downstream 116283 2637335 ~ 2642686 (-) True cpo
XM_034300345.1 mRNA downstream 125873 2617626 ~ 2633096 (-) True efnb2b
XM_034299928.1 mRNA upstream 1136 2768629 ~ 2770657 (-) True LOC113535758
XM_026928790.2 mRNA upstream 29775 2797268 ~ 2804129 (-) False LOC113535480
XM_026928789.2 mRNA upstream 29775 2797268 ~ 2804129 (-) True LOC113535480
XM_034300419.1 mRNA upstream 40824 2808317 ~ 2811609 (-) True LOC113535756
XM_026928792.2 mRNA upstream 56500 2823993 ~ 2827600 (-) True LOC113535483
XR_003403632.2 other downstream 184498 2566757 ~ 2574471 (-) False LOC113535702
TU437816 other downstream 963745 1792187 ~ 1795224 (-) True G369586
XR_004577318.1 other downstream 1159225 1541362 ~ 1599744 (-) False nrp2a
TU437448 other downstream 1482156 1276021 ~ 1276813 (-) True G369242
TU437316 other downstream 1843286 911553 ~ 915683 (-) True G369125
TU438365 other upstream 75719 2843212 ~ 2853211 (-) True LOC117596167
XR_003403643.2 other upstream 1689942 4457435 ~ 4457541 (-) True LOC113535829
XR_004577365.1 other upstream 1691824 4459317 ~ 4459423 (-) True LOC117596196
XR_004577366.1 other upstream 1693716 4461209 ~ 4461315 (-) True LOC117596197
XR_004577367.1 other upstream 1695615 4463108 ~ 4463214 (-) True LOC117596198

Expression Profile