RNA id: XM_026929032.2


Basic Information

Item Value
RNA id XM_026929032.2
length 4997
RNA type mRNA
GC content 0.49
exon number 27
gene id LOC113535598
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2282791 ~ 2331670 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAGTGCAGTTTTAGCAGCGCGGCTAACAGCCAAAAAACGCGGACGCAGAGTTAGGACATGAGGACATGACGAAGAGAAATAAACTCATATTCACTCCCAGGACAGATTTACACCGAGGATTCATTCTCAACATGTGAATTTATGGAGATaaggagggaaaaaatgaaGGCGCCTCGtcttgttcagtgttttgttCTGGCGGTTGCTGTCATCCGGACGAGTCGCGCGCAGGCAGtgtgtgagggCACCGATAACAAGCTCAGCACCCTGTCAGATTTGGACCAGCACTACCACACTCTGCGCAATTTCTACGAGAACTGTGAGGTGGTGATGGGAAACCTGGAGATCACCAGCATCGAGCGGAACCGCAACCTCAACTTTCTTAAGTCGATCCGAGAGGTGACTGGTTACGTCCTGGTGGCTCTGAACCAGTTCGACTATCTGCCTCTGGAGAACCTGCGTATCATCCGCGGTGCCAAACTGTACGAAGGCCGTTATGCTCTGGCCATCTTCCTCAACTACAGGAGAGACGAATACTTCGGTCTGCGCCAACTCGGATTCAACAACCTCACCGAGATCCTGAACGGCGGTGTGTATGTGGATCAGAACAAGTTCCTGTGCCATGCGGACACCATCCACTGGCGGGACATCATGAGGAACCCTCACGCCGAGCTGCTGGTGGTGCCGTCCAACAACAGCGGCTATTCATGCAGACGATGCCATCGATCCTGTAATGGACGCTGTTGGGGACACCAAGAGAATCAGTGCCAAATCTtaacgAAGACGGTGTGCGCTGATCAGTGTGACAGTCGCTGTTTCAGTCCATTCGTCAGTGACTGCTGTCACCGCGAGTGTGCTGGAGGCTGTTCAGGACCCAAACACACCGACTGCTTCGCTTGCACTAACTTTAATGACAGCGGCGCTTGTGTGACTCAGTGTCCTCAACCTTTCATCTACAACCCAACAACCTTCCAGCTGGAGCACAATCCCAAAGTCAGATACACGTACGGAGCATTCTGCGTCAAGAAATGTCCACATAACTTTGTGGTGGATCACAGCTCCTGTGTTCGAGCCTGCCCAAGTAACAagatggaggtggaggaaaACCACGTCAGGATGTGTGTCCCCTGTACTGATATCTGTCCTAAAGtgtgtgatggaataGGGACGGGCAGTTTACACACGGCCCAGACCGTGGACTCCAGCAACATCGACAAGTTCATCAACTGCACCAAAATCAACGGCAACCTGATTTTCCTCATCACTGGAATCAAAGGAGACATGTACCACGGCATCAGAGCTTTGGACCCTGAGAGACTCAGTGTGTTCCTCACAGTTAAAGAGATCACAGGTTTCTTGAACATCCAGTCATGGCCGGAGAACATGACAGACTTCAGCGTGTTCTCCAACCTCAGCATCATTGGAGGACGAACTCTTTACAGTGGCGTCTCTCTGCTGATCCTGAAGCAGCGCTGGATCACATCCCTGAGCTTCCAGTCTCTGCAGGAGATCAGCGCCGGGAACGTTTACATCAGCAACAACAGCCAGCTGTGTTTCTATCACACGCTGAACTGGACGAGGTTTTTCCGCTCCAGCAGTCAGAGAGCTCTGCTGAACAACAACAAGGACACGCAACAGTGCAttaCAGAGCAGCATGTGTGTGATAAGCTGTGTTCAGAAGCAGGATGTTGGGGTCCCGGTCTTGACCAGTGTGTGTCCTGTAGGCACTACAGTCGCGGGAGGACGTGTGTGAAGTCGTGCAACCTGTACCACGGagaattCCGGGAGTTCATCAACGGATCAGCGTGTGTGGCGTGCGACAGCCAGTGTGAGAAATCCGGAGATAAAACACTGACCTGTCACGGACCAgGTGCAGATcagtgtatgaagtgtgttCATGTGAAAGACGGGCCCAGCTGCGTGGAGAAATGTCCTGATGGGCTGCAGGGTGCCGACAGCTTCATCTTCAAATACGCCCACAGCAACAACGAGTGCAGACCCTGCCACACCCACTGCACCCGGGGatgcACTGGACCTCGGATTCAAGACTGCATTGGAATGATGGACAGGACTCCTCTGATTGCAGCCGGAGTGATCGGGATGATGTTTGTGCTCGTGATTGTGGCGCTCGgttttgctgtttatttcagACGCAAGAGCATCAAGAAGAAGAGAGTGTTACGGCGCTTTCTGGAATCAGAGCTCCTGGAGCCTCTTAAAGCCAGTGGAACAGCACTGAATCAGGCTCAGCTGCGCTTACTGAAGGAAACTGAACTCAAGAAGGTTAAAATCCTGGGATCTGGAACCTTCAGTACTGTTTACAAGGGCATCTGGATACCTGAAGGTGaaagtgtgaaaatcccagtgGCCGTAAAAGTCCTCACTGAAACCACAGAACCAAAATCCAACGCAAAGTTTCTGGATgaGGCTGTGATGGTGTCCAGCATGGATCACCCACACCTGCTGCGTCTGCTCGGGGTGTGTGTGAGCCCGAACGTGCAGCTGGTGACCCAGTTCATGCCCCACGGCTGCCTGCTGGATTACGTTCACGAGCACAAGGACAACGTCGGCTCTCAACTGCTGCTCAACTGGTGTGTGCAGATCGCCAAGGGTATGATGTACTTGGAGGAGAGAAGGCTGGTCCATAGAAACTTGTCTGCTTGTAATGTTATGGTGAAATCCCCAAACCACATCAAGATCACCGACTTTGGGCTTGCTCAGCTTCTGGGTGCTGATGTGAAGGAGTACAGTAATGATGAAGACAAGATGCTCATCAAGTGGATGGCATTGGAGTGTATTCACTACAGAAAGTTTACCCACCAAAGTGACGTTTGGAGTTATGGAGTGACTGTCTGGGAGCTGATGACCTTCGGAGGAAAGCCGTATGATGGCATTCCCAATCGTGAGATCCCGGATATTCTGGAGAAAGGAGAACGTCTGGCTCAACCTCTTATATGCACCATAGATGTCTACATGGTCATGGTCAAATGTTGGATGATCGATGCTGACAGTCGTCCCAGGTTTAAAGAGCTCGCTACAGAGTTCTGCAGGATGGCAAGAGACCCTCAGAGATACCTAGTCATCCAGGGGGATGACAGCATGAAGCTGCCCAGTCCCAGCCACAGTAAATTCTTCCACAGTCTTTTGGATGAGGACGAACTCGGAGATGTGATGGATGCTGAGGAGTACCTGGTTCCTCACAACCTCaattctcctgtttcctcccatcCATCCAGCCCTCATCTGGATTCCAATCAGGGACTGAGCGATGCGACAATAGGAACACAGAGTTGTGAGGCAGCCACGTCGTCTGGTGAACTGTTTTTCCCAGTGAGGCCTGGGAAGGAGGAGCAGCTCTGTCATGGAAGGCTGAAGAAGAAGCTCAGCACTGCCTTTGTGGAGGACAGCAGCTGTCGACGCTACACTACAGATCCTGCTGCATTCCTGAAAGAAAGAACCCAGAGGAGAAGTGCTGATGAGGATCGTTGTATTGCCGCCAAGAATGACAAGAGTTCCTCAGACCCTATTGAGGAGAATCCTTTCATCACACaccagaaaaacagagagattcATGCACTGGACAACCCAGGTTACCATGGCAATCCTGACGGACAGCTCAAGATTGAGGATGAGAACATCAACAGTCCTCTAGACCACAACACAGATGAGATGATCCAAGAGACACTGAAGAAGAGCGGGGTTTCTCTTCCTCTGCTGTCCAGAACAACAAGCAGGACTACAAATAGCTATGTAAACCTCAGCACTCAAACAGAGAGACCCCATGTTCATTTTACACTTCCACCAGTTCAGCCTCCTCAAAGTGGACCAATGAGTCAAAATGGCCACCATCTCCATTCAGGTCACGGTCTATGTACTGATCATCCCAGTAAGTGTGTCCTTCCTTCAGTAACAGGACAAATATGTCACATCAGCCACCAAATCCAGCCTGGTTCTCCTGGTGCTGCTCACGTCTCACACCAACACGATGGTGTTAAAAGTAGCACCACTGCTCTACCAGGTCATGTGATCCATCAAAGCAGCACAACACAAACAGTTGGAACAAACAAGAAGTCCTTTCACACAAACAATCCAGAGAAGTGGCATCACAGCCTTCCAGCCAGTGTTCCACAGCATCCTCCAGATCCTTCGCTGGTCTGCAGGAACAGTTTCATCTACAAGCAGAATGGCCGTGAGAACCCAGAGAACCCTTCAGAGTCCAGCATGAAGCCAAGAACATTTCTGCCTCCGCCACCATACAGGCACAGAAACACTGTAGTGTAGCATCTCAATCATCCATGTTCCTCAGAGACTGCTTCTTCTACCAGCACGTTAAAGATATTACTTTCTTCCTCGGCAGTTCCTGGAACTCACCTGCCAGAACGTTTCATGCTCTTAAGAGAAGAAATAGTGTATTCCTCAGCATCATCCCATAatatattgtatactgtatatgtatatatatccaAACGACTGAGAGAACAAAGTGTACCTTTCAGACTTTTGTACCTCTCCTTCATCCTGTGTGTGGGTAACATTAAAACTTTGTAAATTCTGGAAGATATCGGAGActtttatagtatattttttagaaaactGAAGGCACCGGATTGTTTACACATCAATCttatataataaaaagtaataaaagtacctggaaatatattttttcgTGCTATGTGAGAACGCGTGTGCTGTTCTGAGGCAGCAAAGCCTTAATCAAGAGGCTGGTTAATCCTCCCTGACTCACTCGTggatgttatttaataaaaatgtagagCTCTGAGACATTTCCAAGGCAGAATTGTGAATACTGAGAACGTCTCGCCCTTGGCTTTTTAAAAGGATAATAATTGAATGTTTTCCCTCTCAGTGTTGTAAGTCTATGTTTaacatgctgtattattccTGGTTGTGGACTGGCACAGTGTCTTTTATGATGTATATTTTTGGATTATGATCATTACACAATAAAATGATTACGGTTTAAATGAAACTA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG:

id description
K04361 EGFR, ERBB1; epidermal growth factor receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577295.1 lncRNA downstream 37633 2199025 ~ 2245158 (-) True LOC117596129
XR_004577296.1 lncRNA downstream 37633 2244126 ~ 2245158 (-) False LOC117596129
XR_004577298.1 lncRNA downstream 94849 2186646 ~ 2187942 (-) False LOC117596130
XR_004577297.1 lncRNA downstream 94849 2186646 ~ 2187942 (-) True LOC117596130
XR_004577364.1 lncRNA downstream 138340 2115578 ~ 2144451 (-) True LOC117596194
XR_004577279.1 lncRNA upstream 11443 2343113 ~ 2345533 (-) False LOC113535806
XR_003403637.2 lncRNA upstream 11443 2343113 ~ 2345533 (-) True LOC113535806
TU438165 lncRNA upstream 179086 2510756 ~ 2510962 (-) True G369891
TU438184 lncRNA upstream 188828 2520498 ~ 2522127 (-) True G369907
TU438207 lncRNA upstream 224309 2555979 ~ 2558765 (-) True G369924
XM_034300269.1 mRNA downstream 11138 2261289 ~ 2271653 (-) False LOC113535651
XM_034300270.1 mRNA downstream 11148 2261289 ~ 2271643 (-) False LOC113535651
XM_034300271.1 mRNA downstream 16638 2261289 ~ 2266153 (-) True LOC113535651
XM_034300285.1 mRNA downstream 23643 2256421 ~ 2259148 (-) True LOC117596168
XM_026929215.2 mRNA downstream 345716 1915663 ~ 1937075 (-) True klf7a
XM_026929274.2 mRNA upstream 15558 2347228 ~ 2350989 (-) True LOC113535761
XM_026928728.2 mRNA upstream 169360 2501030 ~ 2515018 (-) False LOC113535442
XM_034299960.1 mRNA upstream 169360 2501030 ~ 2512436 (-) True LOC113535442
XM_026928727.2 mRNA upstream 169360 2501030 ~ 2509139 (-) False LOC113535442
XM_026928963.2 mRNA upstream 191445 2523115 ~ 2542866 (-) True LOC113535562
TU437816 other downstream 487567 1792187 ~ 1795224 (-) True G369586
XR_004577318.1 other downstream 683047 1541362 ~ 1599744 (-) False nrp2a
TU437448 other downstream 1005978 1276021 ~ 1276813 (-) True G369242
TU437316 other downstream 1367108 911553 ~ 915683 (-) True G369125
XR_004577324.1 other downstream 2055689 202654 ~ 227102 (-) True si:dkeyp-75b4.8
XR_003403632.2 other upstream 235087 2566757 ~ 2574471 (-) False LOC113535702
TU438365 other upstream 511542 2843212 ~ 2853211 (-) True LOC117596167
XR_003403643.2 other upstream 2125765 4457435 ~ 4457541 (-) True LOC113535829
XR_004577365.1 other upstream 2127647 4459317 ~ 4459423 (-) True LOC117596196
XR_004577366.1 other upstream 2129539 4461209 ~ 4461315 (-) True LOC117596197

Expression Profile