RNA id: XM_026929168.2


Basic Information

Item Value
RNA id XM_026929168.2
length 3028
RNA type mRNA
GC content 0.49
exon number 4
gene id alkbh5
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 980870 ~ 986570 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CcatgcgcatgcgcagtacagAAAACAGTTTACGGCAAGCGGGTTTACGCTGCACCGTTTTACGGCAACCGTTACGCACTGGACTGAAAATCCCGTTTCCAGGAATTAACCTGGATTTTGTTTTGCAAAGGAAAGATGGATTAACGACAGCAACACTGCTTTATCAGACAGGAGAGACTGTTGCATTGCTGTTCTGTCGCTGTTTAGTTAGCGGTAGCCGCGTTAGCAAGCTAGTCAGTTTCCCAGTCTCCGGTTTGTGTTGATGTGGTGGAAGCTTAGTTACCAATAAATATCTCACTAGCAACAAACCTTAACATTCATTCTTTGGTAAACAGCATTGAACCAGGAATACTTGAGTGTTTAGTGCAGACATGTGcgtttaaagaagaaaaaaacaccaggttcttttttttttttttccagtttgctTAGCTAACAGTTAGCATACGCAGTTAGTGCACAGCGTGCCTTCAGTCACGTCGCTCATGCTGTGTTCAAGTGCTCTCGGAATTATGGTTAACTACGAATTCCCAACTTAGAAGTTGCACACAAGTTAATAACACGACTTAATATTTTCAAAGCATTAGCGTGGAGGAAAGTGTCACGTTTAGAGGTCGGTGCTTGGTAGGTAAATCTTtgggggaaataaataaataaataaaaaatctttagGTTATAAACATTTCATGTCACAGATTAACTTTATCTATAACGGTTTGGATTATTTCTGTCAATTTTTACAGTAAACTAGATTTAAatagatatatgtatataagttAGGTATATCTAGTTAGGTATTTAATGTGTAAGTAGGTTCACTTGAAAGAAAAGTACTTTATTAGTTACACAATTAGTGAGAAACGGAGGAGTTGAAAGAGCGCCTGAACGCTGCATGAGTGGGGCGCGTGCGCGAACATGGGCACATGAACGGCGCTTTTCAAAACACTGCGGCGCAGAAATCATCAGTCACccgataaaataaaaatgtctgcgAGTGGCTTTACAGATCTGCGCGACAAGCTGAAGTCCATGACGCCGCACAGGGAGAACCACAAGATCACCAAAGTCTCGTCTGAGCACAGCGGCGTGAAGAAGCGCAAACGCCGCGACTCCGGGGACGAGCACGAGCGCgagcatcatcatcatgagGTGGCGGGAGCGCGCACGTCGGAGGCGCGCAAAGTGAAGAGCGGCATCACCCAGGCGCGCGTGTTCACGCCCGAGGAGTGCGCGCGCATCGAGGCCAGGATCGACGAGGTGGTGGCGAAGGGGGACCGCGGGCTGTACCGGGAGCACACGGTGGACCGCGCGCCGCTGCGCAACAAGTACTTCTTCGGCGAGGGCTACACGTACGGCGCGCAGCTGGAGAAGCGCGGCCCCGGGCAGGAGCGCCTCTACTCCAAGGGGGAGGTGGACGAGATCCCGGGCTGGGTGCACGAGCTGGTCATCGACCCCCTGGTGGCGCGCCGCATCATCCCTGAGGGCTTCGTGAACAGCGCCGTGATCAACGACTACCAGCCCGGCGGCTGCATCGTGTCCCACGTGGACCCCATCCACATCTTCGAGCGTCCCATCGTGTCCGTGTCGTTCTTCAGCGACAGCGCGCTCTGCTTCGGCTGCAAGTTCCAGTTCAAGCCCATCCGCGTGTCCGAGCCGGTGCTGTGCCTCCCCGTGCTCCGCGGCAGCGTCACCTTACTCAGTGGCTACGCCGCCGACGacatcacacactgcatccgGCCTCAGGACATCAAGCAGCGCAGAGCCGTCATCATCCTCAGGAAGACGAGACCGAACGCACCTCGCCTAGACACGGTTTCTCTCAGCCCTTTCTCCAGTCCTGCTTCGGAGAGACGGCACGTGCTGAAAGCAAAGCGCTCGCACCGCAAAGCCGACCCGGATGCTGCACACaggcctCGTATATTAGAGATGGATAAAGAACAGCAGAGGCGTTCGCTCCTCCTACATCAGCGTCGTCACGGCGACGACAACGACGACGGCGCCTCGGAGAACTCCTGGAGGAGAGTGGTGAACACGTCGTCGTACTCGtcacactctgaacacacttcTTCATCTCGCCGAGTGAAGATGAGACGCCAATGAAGACCTCTGATAATTAACAATCGActgttagtttaaaaaaaatttaaaaaacgtAACGTTAGACACGTTATACACGTTATAAACGTCAGCGTATAGGATCCAACGGGTTACTGGTGAGGAAAGCGTGATATAAACTTCCTGCAGGTGTGTtcttatttatatgtttttgtaaGAAGGGGTGTGTGAATCGAGCGAGTTTTTAGGTTTAGACTTCGTTATGGATTTCTTATAACAGCGTTAGGAGCAAACCTCTGCAGTAacacaatcaaaaaaaaaaatatatctgtttCGTTTAAGGATTTAAATATTCTCTTTTGGTCTGCTTTATGCTGTTTCTCAATTTCTAGCACCTTAATATGAAATCTGGAACTGACGTCTCCTCAGTATTACTATCTACTTGCGAAGGAATTGTACATTTTCGAAGATTTTCAAGCCGATTCACGAGCCGTCGCGTGCATGCGAGTGATTTTTAGGGATGCGTCGATACTGACATCATTTACACCTTATTacgtactttttttttttaatcttagtCGTATGATATTCTCCACTACCACGTGATACGTGATGTGTAACGTAAGCTTAGCGATCTGGACGAATTTTGCGATTAACGatcaaaacaaagcagaaaatATCACAACGTCTTCCTACGATATAAGCAACCTGATGAAACATCTTTACGGCGTTTAAACGGAGCAGCGTCAGCACAAGGTTGcgtgaggggggaaaaaagagcgCAATGTTCCGTGAACTTCGTGCAACACAAACTGATcgtgcagagaaactgtcgCACGTGCGAGCACCTCACTTCTGCGAGCACCGAGACACGCTCACTTCCTTCCCCCTCGCTCATCACGATCTATACTCTCGTCAGTTCACGGCACCTCGCGCTCGTTTTTAATGACCACGAGTACCAGAGAAAGGTACG

Function

GO:

id name namespace
GO:0035553 oxidative single-stranded RNA demethylation biological_process
GO:0006397 mRNA processing biological_process
GO:0006406 mRNA export from nucleus biological_process
GO:0007283 spermatogenesis biological_process
GO:0001666 response to hypoxia biological_process
GO:0016607 nuclear speck cellular_component
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0035515 oxidative RNA demethylase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10767 ALKBH5; mRNA N6-methyladenine demethylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU437270 lncRNA downstream 32067 869887 ~ 948803 (-) False zgc:77849
TU437326 lncRNA downstream 105667 871589 ~ 875203 (-) True G369130
TU437066 lncRNA downstream 278891 701616 ~ 701979 (-) False prkcba
TU437096 lncRNA downstream 279582 701084 ~ 701288 (-) True G368944
TU437060 lncRNA downstream 307840 671640 ~ 673030 (-) True G368912
TU437443 lncRNA upstream 280136 1266706 ~ 1270364 (-) True LOC117596193
XR_004577363.1 lncRNA upstream 280511 1267081 ~ 1270425 (-) False LOC117596193
TU437449 lncRNA upstream 290503 1277073 ~ 1277650 (-) True G369243
TU437513 lncRNA upstream 378793 1365363 ~ 1375213 (-) True G369298
TU437512 lncRNA upstream 383564 1370134 ~ 1396598 (-) True G369297
XM_034299980.1 mRNA downstream 1638 970792 ~ 979232 (-) True mief2
XM_034299979.1 mRNA downstream 1655 970792 ~ 979215 (-) False mief2
XM_034299981.1 mRNA downstream 6246 970792 ~ 974624 (-) False mief2
XM_026929344.2 mRNA downstream 11253 963855 ~ 969617 (-) True smcr8b
XM_026928831.2 mRNA downstream 78381 897224 ~ 902489 (-) True fscn1b
XM_034299982.1 mRNA upstream 1185 987755 ~ 1026021 (-) True myo15ab
XM_026928797.2 mRNA upstream 65820 1052390 ~ 1113599 (-) True cacna1hb
XM_034300142.1 mRNA upstream 181058 1167628 ~ 1190548 (-) True LOC113535776
XM_034300143.1 mRNA upstream 218194 1204764 ~ 1246041 (-) True slc5a10
XM_026928712.2 mRNA upstream 369153 1355723 ~ 1365906 (-) True LOC113535431
TU437316 other downstream 65187 911553 ~ 915683 (-) True G369125
XR_004577324.1 other downstream 753768 202654 ~ 227102 (-) True si:dkeyp-75b4.8
TU437448 other upstream 289451 1276021 ~ 1276813 (-) True G369242
XR_004577318.1 other upstream 554792 1541362 ~ 1599744 (-) False nrp2a
TU437816 other upstream 805617 1792187 ~ 1795224 (-) True G369586
XR_003403632.2 other upstream 1580187 2566757 ~ 2574471 (-) False LOC113535702
TU438365 other upstream 1856642 2843212 ~ 2853211 (-) True LOC117596167

Expression Profile