RNA id: XM_034300162.1


Basic Information

Item Value
RNA id XM_034300162.1
length 2903
RNA type mRNA
GC content 0.45
exon number 2
gene id tlr2
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 703199 ~ 711315 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttttgtttttgcagctTCAATTCTTCCTGTGATGCAAATTTTATTTCATCCTGATGTTCTGAGCTTCTCGACAGGAACAACACGCATCCGACATGACAGCAATCAGGATGAAGGTGTCACTGTCCATATTTCTCAGTTTTAGCCTGACTTGGATTCACACTCAGACCTCCGAGAGACCAAACTGTTATGAATGTGACGAAGATCACTTCTGCAACTGTTCTGCAAAGAATCTCCACCGTGTACCCATAGTTCCCGCCAACGTTCTTTCTCTTGACGTGTCCTTCAACGAGATTGAGTCCATTACTCAGAAGGATCTGACCGTGTATACGGAGTTGAGAACTTTAAAGCTGCAGAATAACAAACTCAGCATGATCCACAACACAGCATTTAATTCCCAGAGCAAACTGGAAGAGCTTGATCTGTCGTTCAATAAACTGGAAAACATTTCTTCACTGTGGTTTTCTAAGCTTCAATCTCTGAAACATCTGAACATCTTGGGAAACCAATATACAACCTTGGGATCTGTTGCCCTGTTTCAATTTGCCGATAATCCTGCACTGAGAACGTTAAAATTTGGTAACCCTTTGATCAAGGATGTAAAACGGAATATGTTGGGTAAGATTAGACAGCTGGATGAGTTGACGTTTGTCTGTCGTAACCTAACGTCTTATGAGAATGGAAGTTTCCAGACAGCTCATCCCATCAGGGCGGTTTCAGTCAGCCTTCAGGAGTTGTTTCAGGATGATCCAGAGCTCGTATCAAAGATCCTTCGAGATGTTTCTCACCCTGAGACGTCACTGACCATTAGAGATGTTTCACTGGAGACAAGAGAACCCATACAAGCCTTTAAAGAGGTCAGAAAAGGTTGTACCAGAAGGCTTACCATTCAAAACGTAAGCACAACTGACGAGGGAGTCACCCACTTTCTAGAAGTTTTGGATGGCTCTCCGATGTCTTACATCGGTCTCGAGGATATTCACCTCAGAGGTCGTGGTTGGTGGCAAAGAGCTCAGTGGTCACACTACGAAAACCTGCACACGACTTTTATCCGCAACTTAGAAATCCAGGGCTTCTTCACTTTTAGCAGCATGATACAGTTAGCATTTCTGTTGAAGCGTCTCAACAACATATCCGTTATCAACGGCACTGTTTTCGTTATTCCCTGCAACACCACCTATTTTCTGCGAAAGGTGGAGTACTTGGACCTGAGCCAAAATCTCCTATCAGATATCACCATGCAAGAATCTTTATGCAACGGTCACTGCATCATGCGCAATCTTAACACACTCAATGTAAGTCACAACTCACTGAAATCTCTCCATCTCATGTCACGCCTGGTCACGTGTCTCCACAGGCTCACATCGCTGGACGTAAGTCACAACAACTTTTTGAAGATGCCACAGATTTGCAATTGGCCTGCAAGTCTCAGGTTTATGAATCTCTCTGCTACCAAACTTCATCGCATAACTCCGTGCCTGCCTCTGAGCCTGACTGTTCTGGATTTGAGCCAAAATTACCTGACAGAGTTCCACCACCATCTTCCCAACCTTATGGAGCTCTGGCTTACAGGAAACAGGTTTATTTCCCTCCCGGAAGGTGGACGTTTTCCCAGCCTGCGGATTTTGCTCATTCAAAGCAACACGTTGAACGTGTTCAACAAAAGCGACCTGATGGCATTCCAGTCTCTCCAGTTCTTGGAAGCTGGTCAGAACAATTTTGTCTGCAGCTGTGATTTTGTAGAATTCTTTAAAGGTCATATTGACCAGTTGATTACTCTAAGGGACGGACATCGCAGCTACGTGTGTGACTCTCCTTTCACGTTAAGGGGTCGTACTGTCGATAACGCTCAACTATCGGTCTTCGAGTGCCACATGATCCTGTCAGTGTCCATCCTCTGCTCTGTGATTGTCCTCGTCCTAATCACCATCGGGGTCACCTGCTACAAACTTCACGTCTTATGGTATCTACAGATGACTATGGCATGGTTAAAAGCCAAAGGTAAGCCAGCCGTACACAGAGAAGATGCTGTTCTTCGCTACGATGCTTTCGTATCATACAGCCAGCACGATGCAGAGTGGGTCGAAGAAATCCTAGTGCCGGAGTTAGAAAGCGCTGAACCTCCGGTTGCTCTGTGTCTGCACATGCGAGACTTCCTTCCAGGCCGCTGGATCGTCGACAACATCATCGAGTCCATCGAAAGTAGCTATCGGACTCTCTTCGTCCTGTCGGAGAACTTCGTGACGAGTGAGTGGTGCCGCTACGAGCTGAACTTTTCGCATTTTCGGATCATGGACGAGCACAACGATTCGGCCGTCCTGATCCTGCTGGAGCCTATCGCCAAAGAGACGATTCCTAAGCGTTTCTGCAAATTGCGCAAAATAATGAACTCCAGGACGTACCTCGAGTGGCCTCAGGACGAAGAAAGGCGAGAGGAGTTCTGGCACAATCTCCGAGCTGTGCTTAAGAGGGAGGACGACTGATACGCCTCGGATCACGCCTTTGTCAGATTGGAGACTCATTCTGTATTTCATTTTGTCTATTATTAAGGTTCTGAATTATGTCCGTGCAGAAGCTTTTTGAATTCTTCCTAATAAAATGCTACCCTGTAGCATTTAGTGTATTTATAAAAGCTTACTGACTAATTTAATCTAACATAATCAACACCGTTAGAGTTTATTATTCCTGTGCTGTTGTAAAGATTAGACTTATCTCAAACCTAGACTCAAGCTCTGTCTTAAATCTGATAAAAATCTgctttcaataaataaaagttttatccatttaaggATCGTTTGCATTAGGGGCTTTCCTTTTACTTGTCAGCTTCCTCATAAAATAGagaacataacacacacacacacacacacacacacacctaccccTTATGAGTAACTCTTTCGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU437066 lncRNA downstream 1220 701616 ~ 701979 (-) False prkcba
TU437096 lncRNA downstream 1911 701084 ~ 701288 (-) True G368944
TU437060 lncRNA downstream 30169 671640 ~ 673030 (-) True G368912
TU437062 lncRNA downstream 30169 671640 ~ 673030 (-) False G368912
TU437049 lncRNA downstream 111120 591252 ~ 592079 (-) False rasd3
TU437270 lncRNA upstream 161647 869887 ~ 948803 (-) False zgc:77849
TU437326 lncRNA upstream 163349 871589 ~ 875203 (-) True G369130
TU437443 lncRNA upstream 558466 1266706 ~ 1270364 (-) True LOC117596193
XR_004577363.1 lncRNA upstream 558841 1267081 ~ 1270425 (-) False LOC117596193
TU437449 lncRNA upstream 568833 1277073 ~ 1277650 (-) True G369243
XM_034300404.1 mRNA downstream 854 653453 ~ 702345 (-) True prkcba
XM_034300403.1 mRNA downstream 51771 645476 ~ 651428 (-) True LOC113535779
XM_026929185.2 mRNA downstream 110604 591136 ~ 592595 (-) True rasd3
XM_026929181.2 mRNA downstream 113803 582498 ~ 589396 (-) True plk1
XM_034299920.1 mRNA downstream 144987 544258 ~ 558212 (-) True chtf18
XM_026928986.2 mRNA upstream 161519 869759 ~ 879270 (-) True zgc:77849
XM_026928831.2 mRNA upstream 188984 897224 ~ 902489 (-) True fscn1b
XM_026929344.2 mRNA upstream 255615 963855 ~ 969617 (-) True smcr8b
XM_034299980.1 mRNA upstream 262552 970792 ~ 979232 (-) True mief2
XM_034299979.1 mRNA upstream 262552 970792 ~ 979215 (-) False mief2
XR_004577324.1 other downstream 476097 202654 ~ 227102 (-) True si:dkeyp-75b4.8
TU437316 other upstream 203313 911553 ~ 915683 (-) True G369125
TU437448 other upstream 567781 1276021 ~ 1276813 (-) True G369242
XR_004577318.1 other upstream 833122 1541362 ~ 1599744 (-) False nrp2a
TU437816 other upstream 1083947 1792187 ~ 1795224 (-) True G369586
XR_003403632.2 other upstream 1858517 2566757 ~ 2574471 (-) False LOC113535702

Expression Profile