RNA id: XM_026929344.2


Basic Information

Item Value
RNA id XM_026929344.2
length 5142
RNA type mRNA
GC content 0.46
exon number 2
gene id smcr8b
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 963855 ~ 969617 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTTCGACACCGGAAATAACTGCGTGCGTCCAGAAGCGCGACTGTAAATCAGGTTTAGTGCACACTAGCTAgtgcatgagtgtgtttagtgtgcgAGTTTGGTCCTAAAGGTCAgacaacccacacacacacacacacacacacacacacacacacacacacgcctcctCCGGCGCGGTCACGTGGGCTGCGACAGCACCAGTTTCGCTTACCGACGGCTGGTCATCGGACGCCTCGCGCTGTTTACTTGGAAAGTTAAGGCGTAAACTGAACGCGTCAGAATGAAGCAGGGATATTTACAGGACTCGCTGCACTCCATGGACGAGGCGGATTCATGTTGTTTACTCTGATTTCCGCCGGCTGACGGATCTCCAAGTTTGCGCATGTTTGGAGGTTTTTCCTCTTTCAGGTCGCAGTGAAAAGCTACTGGGTGAAGAGGTAAACGCCAGTTCACTCCAGTCACTGTGCATTCGACATTACTGGTGTTTACACTGCACGCGGGCTGAGTCACTGGATACGTCACTGACCCCCCAGCAAAGCACGAGCCAGCACACTGAACTGAGGAGCTCATGTTAAAGGTGGTTCATATttctgtgtgtatacagtagACTAATATATAATTCCAATAACATCATGATTGGCTCTCCAGACTTGCTGGCTTTCACGACAGAGACCGATTTCTTGGAACAATCCACAGAATCGCTTGGACTTCCAGCTGATCTGTCCGTTCCTCTTTACTCATGCTCGGAGGAAGCCTCGCCATGGTCAAAGACATCCAGCGTTAGCTTCAGTAAGGATTTTATTCTTATATCAGAGTTCTCTGAGCAAGTGGGTCCCCAGCCGTTACTAACCATTCCAGACGAAACCAAGGCGTGTGGCTCGTTCGATCTGAATCACTTCTCGCTCAGGATAATGTCCGTGGACTATCAGACCACGTTCGCAGGCCCTGCCGGTTGTGGACATCCTAAACTGAACTTTGTAGAAGACTCAAAAGTGGTGCTGGGGGATTCTAGAGAAGGAGCCTACGCCTATGTTCACCACTTAACGCTGTACGATCTGGAGGCTCGGGGGTTTGTCCGGCCGTTCTGCATGGCCTACGTTTCCTCTGAAGAGGAAAAAATCATGCATTGTTTCCGGCAACTGTCAGCAGAGTTCTCCAAGGCTTCTGAGTGTCTGAAGACTGGAAATAGGAAGAACTTTGCCAACGAAGTGGACAAAAAACTTTCAGACTTGGAGTATACTAGATTAATACTGCTGAGGGAGATAAACAGAGATAGGCTAAGTAAATTAAAAGCTGGCGAGCAGAACGGAATGGGAACGAAGACGAACAGTGGAGCTACAAGGGAAATGGAAAAGAACGATAACAGGAACAGTGAATTGCTGCTGACCACAAAAGAAGAGGAAttgaaagagaaacaaagatgTATATTGTCATTTATAGAAGCTGATAAAAACAACAGCATGCCAGGGTCTGATAAAAAGGGAAATGAACCAGAATGTGACTTGGTTGTTATGAgcaatcaaaatgaaaataacagaTCAGAAAAAGATCAAGTATTTGAGCAGCCTAAGGAAACAAAGGAAGGTCAAAGTGCAACATGTCAGTCAGTCATGTGGGCTAATAAAGCGGATGAGTTGGCTCATGTGGAAAAAGCCATCCAGGAACACAGAAGTCTTTTGAAACAAATCACCTCCTATCCGAACAGGAAGATCAGAGACCCAGAGTTCTTGCCATATGAACCAGACGATACCTTTCATTCTCTGGAGTCTGACCTCGATCCCAACATACTGTATTATTCCCAGAGCCCAGAGTCAGTGGAGGAATGCAGCGATTGCTCACGTGCAAATTCACGCACTCCGCAACTGGTGAGCTCAAGCATGTGTCGACAGTTTGACAAGCGTCTGAAGAATCTGGATGAGCTGTGTGACGAGTACTTCCTGCAGCAGGCGCTGAAACAGCTCCGCGCCATTGAGAAGAGTTTTCGTGGTGACAATAGTTACCTACTCTCACAGCAACGGACTCAAAACTTGCTCGATCACCTGAAGTCCACTAACTTCCTATTTGAAGATTTGTGTGACCTGGAGGCAGAGAAAGGTCAGCAGTTATCCAGACTTCAACCTCGGTCAGCGGTGATTCTTCCTGTTTCCCCACTACAGAGTGAACCTGTAAGTCTAGACTCTTACACGTCATGTGTGGAAATGGTGCCAATCAGGCTTGAGCTCCACAGAAATGGACCTGACTCTGTTCCAACCTCGCCATATGATGACCTGCCTTTGACACCAAACTTCTCAAATGAAGGCACCTGCAAGATTGAGGAAGCTTCCTCACCGATGAAGGATAGCATAAGCAGTGGAGAGAGTATTGAGGTGCTCGGAACGGAGAAGTTCTTTAGAACCCAAGGCCCTATTTATACCATGGAAACTGTTTCACAGAGACCAACAGCATTCCCTGCAGCCACCTTTGAAGGACGAAAAAGGAGAGTAGTCACTCGACGGGAAAACAGCGAGGACAGCATTGAGGTGCTTAGCACTACAGATTCTATCATACCAGATGATTTGAGGGCCTCATACCCTTCTGCCATCTATGAGGAGACCCCAGAGCATGGAGGAGAAGAGAATGACTGTACACGCAGTGCTGAAGATGTTTTGGTTCAGTGCAAAGAAAAACGCCAGGAATGCCTGAGCTCCTCTAGCACCTCTACTATAGTCATAAACCCACCAGATCCCCACATGACCTTGGACTTGTGTCCTTTTGGTGCCCATTCTCCTCTAAGTGAGCCAGGCTCTCTCCAAGACAGGTCTTTCCTATCTACACCAGATGATTTCTCAGATTGCACCAGTTACTGGAGCCTTGGCTCCATAGGCTCTACACTATCTCTCGATCTCCGTGGGGAAAAAAGTACAGCCGGGAGTCGGAGAAAGCGCGCCAGGTTGGGACGGGCCTCTCTGAATTTCCTACGCCAGTTTCCGTTCGCTGTGCACGCCGTGTTTAGCCTGCTGAGTGGCCGAACAGTGGTGGTGCTGGGCAGCGAGGAACGAGTGGTTAGACGCTTGGTCACAGCACTGACCATGTACACTCCTCATCTAGGGAGGTCCAGAGGAAACATCCAGCCCTGGACTTCAAGCGCTTTGCAGATTACTGACCTGCTAACCTGGAAACTCATCGGCTACAACAGATTGGCTTTTCCTTCATCTCCCAGCATGCCACCTTGCCTAGTTCGCTTTAGCCGGTACCTCAGTGTACTGGATGTGGACCAGAAGGCCTTACGCTGCCCGGCCTATAAAGGTTCTCTGATTTGTCCATTGGTGGACGCAAGGACTCACACCATGCGTGGTAGCACCTACTTCCTGTATTCACAGAGTATAATCAGCCAGCTTGTGTCTAGAGCTTTCCTTCTCACATTCTCTCAGCATCCCAGCGTGGAGGTCAGGCCTGAGAACATCCTCGGCGAGTTCCATAAGGATGATCTGAAGATCCTCCACTACCTTTCAGAGCTCATCACACAACACGTGACGGGAACCTCGCCCACGGTCCTACGATTCAGCTACACCGCTAGCACGGTTTTCAAAATCTGACACTGAAAATGACACAACACAGTTATACTGCTGCTAACCTAGCGGTTCTCCAAGCGGGGTTCCGTGGGGTCTGTGAGTTTTGTTACgctggtggaaatcacaaaccACTATTATCAAACTTATTTTaagtatgtttatttattgatttttagaCTGTTTAACCTCAGTAACGCAAAAACACGAAGTCAGCTTAGACCTCATGTAGCCTAAACTACAGATTCTACGGAGTCTGTAGTATTTATTTTCAAGTTAAAAAAGTCTCtagctgcaaaaagtttgagaaccccagGTCTAGCAATCATCTGATTGTCAGTGTGTTCACTTTACTGCTTTTAAGTTATccttaattagaaaaaaaaaaaaaaatcattaggaCAGTGGTGTTGTATGCTTGGATGGTATTCTGCCCcactttctcacacagtgaTCTCAGTGTAAATAGCAGTGCACACAGAAAAGGCCAAAAACTGTAATTGGAGTAATCCTAAATCCCCAAATCCACATATCCTTGTGATTATTTTATTGACTGCCAGAACAGATGGACATGTGCCTGTGGTGTCGGGAAAAGCTCCTATTGCAGCACCTTTAATGAACTTTAAGAGTTTTGAACACATTTTGTGCTGTTGAGATAATTCACTGAATGAACAGCACACCAGCACTGCTTAGGGCAtgaatttattaggaacatctgtacacctgttcTTGCGTCcaaatatccaatcagccaatcacgcgGCAGCAGAGAAATGCACAAACTCATACAGATACACCTCAAGAGCTTCAGATCCAGTACTGGGCCAGGTGATGTTCTCCAATCTTCAGGTTTTGGTGtggattcttgttcttggctggaacccgatgtggttttctgctcttgtagcccatctgccccAAGCTTcggcatgttgtgtgttctgagatgcttttctgctcagcacagcTGTACAGAGTAGCTATTTAAgctaccgtagccttcctgtcaggcCATTCTCTTGTAGACTCGCTAGAGACttgtacatgaaaatcccaggacatcagcagtttctgaaacactcacaccatcccatctggcaccagcaaacCATTGGTCAAAGTCACCGAGAGTCACcaaagtcacatttttttccacgtTAACCgaacttgtatctgcatgatgttttgcattgtgctgctgctacctgattggctgattggataagtgcatgaatgagcaggtgaacAAGCGTACAGCGTCTCCATTAAAGTGTCTGAGTTTAAATCACACGTTATGATACTGAAAAGTTTCTTCAACGTTGCATGTTTAGAGAAAATTACGTGAATGTGAAATACAAGAGGACACGCATGTCTAGCTTTTAAACTGCACATCAATGAAAGAATGTTCTAATATTTAATGGCCCTGAAGTTTCAGAAGTGAAGAAAATACTGCTGTGTTAAAGTGTTGTAGACTTTACACTGCACCAAGAGCAGTtcagtgtgaatgtgtaaataaacGGGAAAGTACTTTGTCAGaagttttaatgtattattatttttttttttaaatatgagagcatatttaaataaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU437270 lncRNA downstream 15052 869887 ~ 948803 (-) False zgc:77849
TU437326 lncRNA downstream 88652 871589 ~ 875203 (-) True G369130
TU437066 lncRNA downstream 261876 701616 ~ 701979 (-) False prkcba
TU437096 lncRNA downstream 262567 701084 ~ 701288 (-) True G368944
TU437060 lncRNA downstream 290825 671640 ~ 673030 (-) True G368912
TU437443 lncRNA upstream 297089 1266706 ~ 1270364 (-) True LOC117596193
XR_004577363.1 lncRNA upstream 297464 1267081 ~ 1270425 (-) False LOC117596193
TU437449 lncRNA upstream 307456 1277073 ~ 1277650 (-) True G369243
TU437513 lncRNA upstream 395746 1365363 ~ 1375213 (-) True G369298
TU437512 lncRNA upstream 400517 1370134 ~ 1396598 (-) True G369297
XM_026928831.2 mRNA downstream 61366 897224 ~ 902489 (-) True fscn1b
XM_026928986.2 mRNA downstream 84585 869759 ~ 879270 (-) True zgc:77849
XM_026929176.2 mRNA downstream 252540 703199 ~ 711315 (-) True tlr2
XM_034300162.1 mRNA downstream 255615 703199 ~ 708240 (-) False tlr2
XM_034300404.1 mRNA downstream 261510 653453 ~ 702345 (-) True prkcba
XM_034299980.1 mRNA upstream 1175 970792 ~ 979232 (-) True mief2
XM_034299979.1 mRNA upstream 1175 970792 ~ 979215 (-) False mief2
XM_034299981.1 mRNA upstream 1175 970792 ~ 974624 (-) False mief2
XM_026929168.2 mRNA upstream 11253 980870 ~ 986570 (-) True alkbh5
XM_034299982.1 mRNA upstream 18138 987755 ~ 1026021 (-) True myo15ab
TU437316 other downstream 48172 911553 ~ 915683 (-) True G369125
XR_004577324.1 other downstream 736753 202654 ~ 227102 (-) True si:dkeyp-75b4.8
TU437448 other upstream 306404 1276021 ~ 1276813 (-) True G369242
XR_004577318.1 other upstream 571745 1541362 ~ 1599744 (-) False nrp2a
TU437816 other upstream 822570 1792187 ~ 1795224 (-) True G369586
XR_003403632.2 other upstream 1597140 2566757 ~ 2574471 (-) False LOC113535702
TU438365 other upstream 1873595 2843212 ~ 2853211 (-) True LOC117596167

Expression Profile