RNA id: XM_026931689.2


Basic Information

Item Value
RNA id XM_026931689.2
length 1992
RNA type mRNA
GC content 0.51
exon number 8
gene id creb1a
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 13417325 ~ 13427154 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTCGTGAGTCTTCGCGCGCGCTCGACGCTTTCCGGCGCTCCCCGATAGCGAGTCGTGCCGCAGTTTCGTCCTTGCTCGCGTTGTTGTTGTCTGCGGTGACGCGGCGGAGGTGTACCCTGACGCGGGCTCTTACGTGTCGGACTGAATAAAAAGTGGAGCTCCGGAGGCCCGGGAGTGACGCGAGAACAGAGAGAGCGAGTAAGCGAGTCCGTGACCGGGCAGGCCGTGCTAACCGAGTCCACCTCGTTTTCTCACTGCGACTTTTCTAAATGACCATGGACGCAGGAGCAGATGTGCAGCAGGGCAGCGAGACAGCTGTCTCTGAGACAGACACGCAGCAGATTGCCACCCTGGCGCAGgtTTCCATGGCAGCCGGCCAGGCCTCAGCCACCGGGCCCACTGTCACACTGGTGCAGCTGCCTAACGGTCAGACGGTGCAGGTTCATGGTGTGATCCAGGCAGCGCAGCCGTCTGTCATCCAGTCTCCCCAGGTCCAAGCCGTACAGATCTCCACCATTGCTGAGAGTGAGGACTCGCAGGAGTCAGTGGACAGTGTGACAGACACtcagaaaaggagagagatcCTCTCCAGGCGGCCCTCATACAGAAAAATCTTGAACGATCTCTCATCAGACACTCCAGCCGTGCCTCGGATAGAGGAGGAGAAAAACGAGGAGGAATCGGCCCCAGCCATAACTACAGTCACCGTGCCCACCCCCATTTACCAAACCAGCAGTGGACAATACATTGCCATCACGCAAGGCGGAGCCATCCAGCTGGCCAATAACGGCACAGACGGCGTTCAGGGCCTGCAGACTCTGACGATGACTAACACAGCAGGGGCCCAGTCAGGCGCCACCATCCTGCAGTACGCTCAGACCAGCGACGGCCAGCAGATCCTGGTGCCCAGTAACCAGGTGGTGGTGCAGGCTGCATCTGGCGATGTGCAGGCGTATCAGATCCGCACGGCATCGTCAGGCACCATCGCTCCCGGAGTGGTGATGGCGCCGGGTCAGGGAGGTGCCGAGGAGGCCACGCGCAAGAGAGAGGTCCGCCTCATGAAGAACAGGGAGGCAGCGCGAGAGTGTCGTCGCAAGAAGAAGGAATATGTGAAGTGTCTGGAGAATCGTGTGGCTGTGCTGGAAAACCAGAACAAAACCCTCATCGAGGAGCTGAAAGCACTTAAGGACTTGTACTGTCACAAATCGGAATAACACTcgcacacgcatgcacacacacacacacacacacacacatattgcgCTTTTCCCCAGGTCCTACTGAGGCAGTGACTCTTCCCCGTTACATAGGCACCTGGGCAgcagtcttttctttttctatctgtctcttttttttttttttgttttgtttttgtgtgttttttttttttttttttaaagatattggCCTATAAGAAATGAGAAAACCCGAACTCCTAAAATCTAATGCCTTTATTGTcttctgtataaaaaaaaaatccaacctTTTAAAAGAGTGTCTCGTGAGACGTAAAACTCCAAAGCGGCCCGACAGATGTGTTACGAGGTATCGCAGATGCAAAAACAGGGCTGATTTCATCTCAAGTCCTTCACCGTGATTGCGATTTCATTCGGAGAAATCCCACGATGCACCGGTGTTGgatggccacgcctcctttcaaTCACGCTGACTTTTTGGGAGACGGCGTTCGTCCGATATCACCAAGTGGGACTTCAGTGAATTAACAAATGAACTCGGATTTGTTTGAATTTCTATGTGCTTCTGTTACTAACACATGAACCCTATTTTGATATGAAAAATCTATcgaatatgtatgtatatgcttCTATTATGGGTTGTTTTGCCATTTAACCTGCGCCTTTGCCTCTTTCTTTCAGCTCCAGCTTCGTTGCATTGTTTGTGTTAAAGGAAATAGGACTTTCGATCTAAATCAGGATAAAAGTGATTATTTCTGCAATGTTCAAAATACAGTTAAACGCTTTTCAGCATAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001756 somitogenesis biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU444588 lncRNA downstream 229 13416822 ~ 13417096 (-) True G375420
XR_003403790.2 lncRNA downstream 15900 13386832 ~ 13401425 (-) True LOC113537738
XR_003403791.2 lncRNA downstream 17412 13386832 ~ 13399913 (-) False LOC113537738
TU444472 lncRNA downstream 145704 13267882 ~ 13271621 (-) False G375329
TU444471 lncRNA downstream 146120 13267882 ~ 13271205 (-) True G375329
TU444627 lncRNA upstream 71490 13498643 ~ 13505565 (-) True G375455
XR_004577351.1 lncRNA upstream 77151 13504304 ~ 13507133 (-) True LOC117596174
TU444638 lncRNA upstream 93410 13520563 ~ 13520923 (-) True G375466
XR_004577284.1 lncRNA upstream 402028 13829181 ~ 13830571 (-) True LOC117596119
TU444799 lncRNA upstream 405315 13832468 ~ 13834980 (-) True G375614
XM_026931800.2 mRNA downstream 68491 13331029 ~ 13348834 (-) True cd99
XM_026931799.2 mRNA downstream 68499 13321263 ~ 13348826 (-) False cd99
XM_034300020.1 mRNA downstream 96795 13309422 ~ 13320530 (-) False gyg2
XM_026931655.2 mRNA upstream 49319 13476472 ~ 13478258 (-) True cldng
XM_034300257.1 mRNA upstream 440535 13867688 ~ 13902247 (-) True lmo7b
XM_034300254.1 mRNA upstream 440535 13867688 ~ 13902245 (-) False lmo7b
XM_034300256.1 mRNA upstream 440535 13867688 ~ 13902245 (-) False lmo7b
XM_034300255.1 mRNA upstream 440535 13867688 ~ 13902245 (-) False lmo7b
trnar-ucu_18 other downstream 89182 13328052 ~ 13328143 (-) True trnar-ucu_18
trnar-ucu_17 other downstream 91241 13325993 ~ 13326084 (-) True trnar-ucu_17
trnar-ucu_16 other downstream 91717 13325517 ~ 13325608 (-) True trnar-ucu_16
trnar-ucu_15 other downstream 93152 13324082 ~ 13324173 (-) True trnar-ucu_15
TU444510 other downstream 102029 13309038 ~ 13315296 (-) False gyg2
TU444599 other upstream 12066 13439219 ~ 13439535 (-) True G375428
XR_004577357.1 other upstream 555592 13982745 ~ 14016085 (-) False pibf1
TU445045 other upstream 600141 14027294 ~ 14030879 (-) True G375826
XR_003403797.2 other upstream 610578 14037731 ~ 14037862 (-) True LOC113537775
XR_003403796.1 other upstream 611375 14038528 ~ 14038598 (-) True LOC113537774

Expression Profile