Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026931725.2 |
| length | 1098 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 6 |
| gene id | LOC113537306 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047620.1 |
| NCBI id | CM018566.1 |
| chromosome length | 19313417 |
| location | 8087780 ~ 8090097 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006301 | postreplication repair | biological_process |
| GO:0060135 | maternal process involved in female pregnancy | biological_process |
| GO:0033522 | histone H2A ubiquitination | biological_process |
| GO:0009411 | response to UV | biological_process |
| GO:0008284 | positive regulation of cell population proliferation | biological_process |
| GO:0051865 | protein autoubiquitination | biological_process |
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0070936 | protein K48-linked ubiquitination | biological_process |
| GO:0070979 | protein K11-linked ubiquitination | biological_process |
| GO:0002474 | antigen processing and presentation of peptide antigen via MHC class I | biological_process |
| GO:0001701 | in utero embryonic development | biological_process |
| GO:0001741 | XY body | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0033503 | HULC complex | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0031625 | ubiquitin protein ligase binding | molecular_function |
| id | description |
|---|---|
| K10573 | UBE2A, UBC2, RAD6A; ubiquitin-conjugating enzyme E2 A |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU441040 | lncRNA | downstream | 3241 | 8082963 ~ 8084539 (-) | False | cars2 |
| TU441021 | lncRNA | downstream | 71392 | 8016105 ~ 8016388 (-) | True | G372307 |
| TU441014 | lncRNA | downstream | 98582 | 7988950 ~ 7989198 (-) | True | G372300 |
| TU441002 | lncRNA | downstream | 110789 | 7976777 ~ 7976991 (-) | True | G372288 |
| TU440867 | lncRNA | downstream | 178228 | 7909124 ~ 7909552 (-) | True | G372168 |
| TU441219 | lncRNA | upstream | 112671 | 8202768 ~ 8204224 (-) | True | G372471 |
| TU441222 | lncRNA | upstream | 171338 | 8261435 ~ 8267189 (-) | True | LOC113537489 |
| TU441285 | lncRNA | upstream | 338507 | 8428604 ~ 8444065 (-) | True | G372522 |
| TU441552 | lncRNA | upstream | 684935 | 8775032 ~ 8788141 (-) | True | G372742 |
| XR_003403741.2 | lncRNA | upstream | 873488 | 8963585 ~ 8965621 (-) | False | LOC113537261 |
| XM_026931658.2 | mRNA | downstream | 3295 | 8069402 ~ 8084485 (-) | True | cars2 |
| XM_026931731.2 | mRNA | downstream | 21329 | 8062221 ~ 8066451 (-) | True | LOC113537312 |
| XM_026931738.2 | mRNA | downstream | 33235 | 8042485 ~ 8054545 (-) | True | irs2a |
| XM_026932396.2 | mRNA | downstream | 77547 | 8006372 ~ 8010233 (-) | True | lig4 |
| XM_026931620.2 | mRNA | downstream | 94684 | 7912210 ~ 7993096 (-) | True | fam155a |
| XM_026931724.2 | mRNA | upstream | 1269 | 8091366 ~ 8105352 (-) | True | ankrd10a |
| XM_026932151.2 | mRNA | upstream | 37464 | 8127561 ~ 8131183 (-) | True | cryaa |
| XM_026932402.2 | mRNA | upstream | 42890 | 8132987 ~ 8148533 (-) | True | cbsa |
| XM_026932222.2 | mRNA | upstream | 60043 | 8150140 ~ 8157560 (-) | True | u2af1 |
| XM_026931962.2 | mRNA | upstream | 122806 | 8212903 ~ 8218195 (-) | True | rab9a |
| TU440974 | other | downstream | 171459 | 7912466 ~ 7916321 (-) | False | fam155a |
| TU440780 | other | downstream | 362985 | 7718263 ~ 7724795 (-) | True | G372086 |
| TU440391 | other | downstream | 1019249 | 7058835 ~ 7068531 (-) | True | LOC113537271 |
| XR_004577289.1 | other | downstream | 1019313 | 7058835 ~ 7068467 (-) | False | LOC113537271 |
| XR_004577329.1 | other | downstream | 1724577 | 6358639 ~ 6363203 (-) | False | LOC113537742 |
| TU441267 | other | upstream | 230887 | 8320984 ~ 8329026 (-) | False | timmdc1 |
| TU441284 | other | upstream | 339514 | 8429611 ~ 8432424 (-) | False | LOC113537606 |
| XR_004577317.1 | other | upstream | 501310 | 8591407 ~ 8606840 (-) | True | tsga10 |
| TU442201 | other | upstream | 1788746 | 9878843 ~ 9918740 (-) | True | LOC117596103 |
| TU442843 | other | upstream | 2781187 | 10871284 ~ 10872546 (-) | False | lipt1 |
