RNA id: XM_034299961.1


Basic Information

Item Value
RNA id XM_034299961.1
length 2150
RNA type mRNA
GC content 0.49
exon number 2
gene id sox1b
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 10696458 ~ 10698691 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTCGCTTCGCTCTCATTTAGCGGCTGTCAAAGCGCATCATATGGCCGCTCTGCTACTAACTTTTCTCCCGCGTCGCCCAAAGTAGCTCACAGGCTTTTCACTGCACCGGATGAGCAAATCAAAAGCTGAAAAGAAAGGTAAAGAAAATAGCGACTTGTATCGTTTTGGATTGTATACCTGTTTCCTTGTTCTGTGGGAACCTTTTCTTCTCCGCGTGCGTGCCAGCGGTCAGGACAGGGACGCCGCGGCTTGGCTCCAAGAGTGAATGTTTCTCGCGTGTTGAGTGCGAAAGTTAAAGCCAGGTGAATGTATAGCATGATGATGGAGACGGACTTGCATTCCCCGGCACCCCAAACGAACACGAGTGCGGGGCACACGGGCCAAAATGCTGCGGGGAAACTGAGCCAGGAGCGCGTCAAGCGCCCCATGAACGCGTTCATGGTGTGGTCCCGCGGGCAGCGGCGGAAGATGGCACAGGAGAACCCCAAAATGCACAACTCGGAGATCAGCAAGAGGCTCGGGGCCGAGTGGAAGGTCATGTCCGAGGCGGAGAAGCGGCCTTTCATTGACGAGGCGAAGCGCCTGCGCGCCATGCACATGAAGGAGCACCCGGATTACAAGTACCGGCCACGCAGAAAGACCAAAACGCTGCTTAAAAAGGACAAATACTCCCTGGCCGGCGGGCTGCTCGCAGGCTCTGCCGGCGGTGGCGGTGTGACTCTGGGGATGAGCACAGCGCAGAGGTTAGAGAGTCCCGCGGCCATGATGCAGGAGGCGCAGTTAGCCTACGGGCAGCACGCAAGCGCTGGGGCCGCTCACCATCACGGACACCACCCGCATCACCATGGACACCACCACCCGCACCATCAGCACGCCGCCAGCGCGCAGTCCGTGCACCGCTACGACATGAGCGCGCTGCAGTACAGCCCCATGTCGAACTCTCCGAGCTACGTGAGCGCCTCGCCGTCGACCTACGCCGCCATGTCGTACACGCAGCACCAGAGCTCCGTCTCGGCGGCGGCGGGAGGCGTCGGCGCGCTCGGCTCGCTCGTGAAACCCGAGCCGAGCGCGAGCCCTCCTCTCAGCGCCGCGTCCCGCGCGCCCTGTCCCGGTGACCTGCGCGAGATGATCAGCATGTACTTACCGGCGGCGGAGGCTGGAGACGCGGCTGTTCAGAGCAGACTGCACGCGCTCCCGCAGCACTATCAGAGCACCGCAGCTGCCATTAACGGAACCGTCCCGCTGACGCACatttaaagaaagaagcaaactcATAAAACTGAACCCCATTTATTCACAAACAAGTAACCAAATATTTACCTCTTTTTAGATTATACATACCTGCTTTTTGTACAGAATGTTTTCTTGTAAATTTAAAGGTGGTTATTATTTAAGCCTTGCTTCACCGGTACTGTCAGATCAGAAGTCTTTTCTCCGGTTTGCCTACATTTCAGATTATAGCTTTAGGCCAATATGTGAAAAGAAAGGCGAAAGGGATACCAGCCTTTACACTAGATCATCTTGTGAACACTTAAgagtttgaaatatttttaatgattattatctGTGAACTACAGGTTTTAATACGCAGGACACTCCGGGGAACAAGTCAGAGTGAAAACACCTACTATATTTTAAAGCTTATTTTATTTGTCCAAAACCCGCAATTGTTTGGTTTGTAAACACGTGACTGagcctgtgtatttattctttcttttttcttttttttttttttggtcggTGTATTTTTCATTCTTGTAAATTGTGCAAATATGATAGAGCGAAAAAAAGTGATAGGTCTGAACAAACTGTAAATAGCtcgttgattcatttttcacttgattattattattattattattattattattattattattgcaaatagaaaagcaaagtttttttttttgcgttggGATGAAACGAATAAATTTCTCAGCTGTTGCTCTTATTCTGGTGTTAATTTGGTCTTTGCATCCACTAGCCACTCCAGTGTCCTGAGCCAAACCGCACTGTGAGCTCAGGGCAGGTAGAACAATACATAAATAATCAATCAGTAAATAAAACGCAAATTGGAAAATGAAACCGCAACAATGTGAACATATTGTGAAAATATTATAAGTTTTAGAGTCCAGTGTAGTCTATAGGA

Function

GO:

id name namespace
GO:0051091 positive regulation of DNA-binding transcription factor activity biological_process
GO:0005667 transcription regulator complex cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU442685 lncRNA downstream 131534 10495636 ~ 10564924 (-) True G373762
TU442650 lncRNA downstream 272991 10422163 ~ 10423467 (-) False cab39l
TU442628 lncRNA downstream 403880 10290637 ~ 10292578 (-) True LOC113537663
XR_003403786.2 lncRNA downstream 403880 10290643 ~ 10292578 (-) False LOC113537663
TU442626 lncRNA downstream 407085 10288380 ~ 10289373 (-) True G373719
TU443009 lncRNA upstream 229776 10928467 ~ 10929554 (-) True G374040
TU443008 lncRNA upstream 231048 10929739 ~ 10933407 (-) True G374039
TU443070 lncRNA upstream 369040 11067731 ~ 11067952 (-) True G374091
TU443072 lncRNA upstream 385951 11084642 ~ 11120831 (-) False G374093
TU443073 lncRNA upstream 416981 11115672 ~ 11120831 (-) True G374093
XM_026932230.2 mRNA downstream 134751 10529524 ~ 10561707 (-) True tubgcp3
XM_034300221.1 mRNA downstream 169582 10439948 ~ 10526876 (-) False mcf2la
XM_034300220.1 mRNA downstream 170084 10439948 ~ 10526374 (-) False mcf2la
XM_026931951.2 mRNA downstream 171334 10439948 ~ 10525124 (-) False mcf2la
XM_026931955.2 mRNA downstream 181371 10439948 ~ 10515087 (-) True mcf2la
XM_026932043.2 mRNA upstream 107744 10806435 ~ 10838961 (-) True arhgef7b
XM_026932044.2 mRNA upstream 107744 10806435 ~ 10838958 (-) False arhgef7b
XM_026931840.2 mRNA upstream 151685 10850376 ~ 10870096 (-) True eif5b
XM_026932101.2 mRNA upstream 172533 10871224 ~ 10872556 (-) True lipt1
XM_026932231.2 mRNA upstream 235454 10934145 ~ 10946702 (-) False map2k7
TU442201 other downstream 777718 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 2089618 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 2264034 8429611 ~ 8432424 (-) False LOC113537606
TU441267 other downstream 2367432 8320984 ~ 8329026 (-) False timmdc1
TU440974 other downstream 2780137 7912466 ~ 7916321 (-) False fam155a
TU442843 other upstream 172593 10871284 ~ 10872546 (-) False lipt1
trnar-ucu_14 other upstream 774189 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 2610347 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 2625391 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 2626826 13325517 ~ 13325608 (-) True trnar-ucu_16

Expression Profile