RNA id: XM_026931824.2


Basic Information

Item Value
RNA id XM_026931824.2
length 5438
RNA type mRNA
GC content 0.50
exon number 53
gene id col17a1a
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 8640512 ~ 8669319 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATACTTGTACAGTTGTGCATGAGTCAGAGATAAGCGCTCTGCAGTGAGGTAGCACATACCTGGCCTCTGTGTCACTGGACCTGATCGGAACCACATCGTGAGTATAATACTCGTGTTCGGTACTGACGGTTGACACGCACCAGCACGCGAGAACACAGCGTGAGACATTTCTCCAGTCAGAGGCAACAGTGAACATGGAATGGACAATTTAATCACAACCAAGATTGTGAATGCAGAGGGAGGATCAGTCGTTTCAGGGAAAGttacagagagtgtgaccaccacaaCCAGACTGACATCCCTTCCTCCAAAGGGCAGCAGTAGTTCAGTGAGCACTCAGCGGGTGCTGACATCTACCTCTAGCTCTAGCTCtagttctggttctggttctggagGAACAGTGCTGGTGGAGAGGAGGATCATCACCCAGAGcagcggaggaggaggaggaggaggaggaggtggaggagggagCAGCAGTAATGTCATATCCTTAGGTGGCTCAAGTAGCAGTGCGGTGCAAGTTGTGACTGGTGGCGTGAGCAGTGGCTCATCTGTGACTTCATCTTCTCTGGGAACATCTTCAAGTGGAGCTGCTGGAGGTTTGGGAGCTTCTGGCAAATCCTCCTCCATCATTACAGTTGGAGTTTCTTCAGGAGGAGGCGGGGGTTCTGCAAGCGCTTTCGAGTCCCGCTCATCTTCTCAGCTTGTGTCCAGCTCTTCTGGGGACTTAGGAAGCCTTTCAGTTGGTTCTATGAATCTGTCAGGGGGTGGGGCTCACTCATCAGCCATGTTTTCTGGAGGAGGGGCTTCGTCGACTGTTATATCAGTGGGAGGTGGCTCTACCAAATACACCTCTTCTACGACAAGCGCCACGAAGAGTGCTAGCTACTCACCAGTCACACAGAGGAAAAGCAGCCTGACCCTGCGTACTGCAGGATATGAAGgaagCTCCAGTGGCAACTCCTCCCCTGAATATACTAGGAAAGAGTATGcagcagcagcaagtgcAGCCACCAGAGGACGCACCCAGACAAGAGAGAGTGAGATCAGAGCCAGACTGCAGAGTGCCTCTCCATCCACTAGATggACTGAGCTGGATGATGTGAAGAAACTTCTTAAAGGAAGTCGCTCCAGTAGCAGCAGTCCTCCTCGCTCTCCCACCAATACACTGCCCATACCTAAAAAAGCAAGCGTGGACACACGCGTGGAGAGCcactcagGATATGACAGCTCTATCCTGGAGTCTGCGTATAATGGATATGGCTATCACACCAACCCCAACAACCTCAGCCCCAACTCCACTCTACAACACAACATGGGCCTGCAGAACAACCTGACCTTGAACTCCACAGCCATGGGCAGTGGCCTTTCTGCTGGAAATGCAGtGTATGGGATGCAGAATAACTTGGCAAGCGGTGGGGGAGTGGCAGTCACTGCAAATGGGCTTAGTATTGCTCCAGTATATGGAGTGAGAAAGAACATTGTGAGCACTACAGCTCCCACAACTGCTGCAGCCGCCCCCAGCAGCCCTGTCACCACCGATGATGTGTTTGTTAAGGATTACAAGTTCATGCTGCTGGAGAAAGACAACGTTCCAGTGAAGAAAGAAAGCGAGAGGCTGATTATGTCGAAAGACACGGGCAAAACATTCACTTCCACCGGTGGACTATCAGCCACATTTTCAGATGACTCgctgaaaagagagaaaaagatgatCTCTGGAACCACAGAAACAGTAGTCAGTGGTGTCAAAGTTGCTGCAACAAAGGATAAAGCCACATACGCAGAGATTGGTAAAGATGAATCTGGAGGAGGTGGGATGGGATTCTGCTCCTGCTGTACATGGTGGAAATGGCTGCTTGGATTGCTGTTGGGACTGCTCTTACTGCTGGGTCTTCTCGCTGGACTCATCGCTCTCTCTGAGGAAGTAAAGAGCCTAAAGGCTCGAGTGGAACGTCTGGAAGGCGGCGGGAGCACCATAGGCTCCGCTCACACTAGCCGCCTGTCAGCACCATCCTCTGTGAACATTTTAGATCCAATGGATTCTGTACAATATGAACGCACCCCTATAACACGATCAGAAAACACTATACAACTAGGATCTGTCCAAACGCAGCCTGACCCAGCCACACTGCACAGGACCATAAAACAACTCGTTCACTCTGAACTACAGTCAGAGACCGTCAGAGCTACTCTGGCATCCTCActgaaaggagagagaggggagcCTGGGGCCAAAGgtgaCCAGGGAGCACCTGGGATTAAAGGTGATGCAGGATTTCCTGGAGTGCCAGGTCCTCCTGGTCCTCCTGGTCATCCAGGACAAGAAGGTGCAAGAGGACCTAAAGGAAGTGCTGGTGAGCCAGGACATGATGGCCCTCCTGGACAGAGAGGCCGTGAGGGGCCAACAGGACCCAGAGGAGAACCAGGCCCTCCTGGAGTGggtgagaaaggagagaaagGGGTATCTGGAGAGCCTGGACCTTCTGGACCTGCAGGACCACCTGGACCTATGGGACTCAGAGGTGAAATGGGTGCTCCGGGTACTGTGGGTCTTCCAGGGGCTCCTGGTCCTCAAGGCTTCCGTGGAGATGCTGGTGATCCTGGACCAAAAGGAGAGAGAGGACCTGCAGGGCCTCCTGGAGCTAAAGGTGATCAAGGAGAGAAAGGGCCCCGTGGTGTTACTGGAGAACCAGGGCAGCCAGGACCCATCGGTCCACCAGGAGAGAAAGGACCCAAAGGATCAGCAGGTGCCCCTGGGCCAGATGGTGCAAAGGGAAATCGTGGGGACCAAGGACCAACTGGGTTGCCAGGTCCACGTGGACCAGCTGGACCTCCAGGAGATGCAGGCGTGCCAGGAACTCCAGGGCTTCAAGGACCACCAGGTTTGCCAGGAACACCAGGACAGCCTGGGGCTAAAGgTGAACCAGGTGAACCTGGAAGAGTTATCACTACAGGCTCTGCTTCCAACACTGTGGCTATTCCTGGACCCCCTGGACCTCCTGGACCAGCTGGGCCTGCTGGACCTCCTGGACTGTCAGGTCCCATTGGCCCTGCTGGTCTTCCTGGCCCGGCTGGACCCAAGGGAGGAAAGGGTGACAAGGGTGATGATGGTGAACCTGGCATTTCTGCAAAATCTGTTGAAAGAGTCAAGTTTGAGCCTGTTGCTGGTCTTCCTGGTCCTCCTGGCCCCCCTGGACCACCTGGAGAACCAGGGAAACCTGGTGAAGGCAAAACTGGCCTACCAGGACCCCCAGGTCCACCTGGAGAGCCAGGTATTGGTCTCCCTGGTCCACCTGGTGACAAAGGTGAACCAGGAAGCTTTGTACCCACCTCAGAAACCTTTTTCGCTGGACCCCCTGGGCCTCCTGGACCTCCTGGACCTCAAGGAGAGCCTGGTCATCCTGGACTACCAGGAGAACCTGGAGTTGGTTTTCCAGGGCCTGAAGGCCCAAGTGGACCCCCAGGTCCTGAAGGCTTACCAGGCCCTCAAGGACCACCAGGCCCAGAAGGGCCACCAggtccaaaagGTGATGCTGGTGTCCCAGGGGCCCCTGGCATCCCAGGATATTCTTATGGTGGAGGCAGAAGCTCACCTGGACCACCAGGTCCACCTGGACCTCCAGGGCCTCCTGGACCTCCTGGTGATGCCTCTGGCTCTCCAGACATTTCTCAGCAGCTTAGTGACCTTCTTAGAAATGGTGGCATTAGGGAATACTTCACTGGTCCTCCTGGGCTTCCTGGACCACCTGGAAGTGTATCTGATGATGATTTGGCTAATCGTGTAATCAGTTACATACAAAGAGAGGAGGTGAGGCAGTATCTGGTAGGTCCCCCAGGACCACCCGGACCTCCGGGTATTCCAGGCCTCAACCCTCAGGAAGTAGCTGGAAGAGTCCTCAATCTTATGAATGAGCAGGGTATGCTGACGCAATCTGGACCTCCAGGCCCACCTGGCCCTCCAGGACTTCCTGGAACACCCTACAATGATCTCCCAATTCTCTTACAAAATGCTGGTTTTAGAGGCCCACCTGGACCCCCGGGTCCTCCGGGACCTCAGGGTCCTCCTGGAATCACAGGGGGCCTGGTGTCATATGCTGAGAATGCACATCAAGAGCCAATCCGTGCTGAACTGCAGGAATATCTAAAGAGTGGCAGGGTGTTCCGTGAAGAGCCAAGCCATAGCTTTGCAGAGAGCAAACATTTGCCTGTTGAGACTTTGGACTACCCCAGTATTGCAGAACAAGTGGTGAACTACATCAAATCTCATGGTTTGTTGTTGTGGGATCTCAAAGATATTCAAGGGCCGCCAGGTCCTCCTGGACCTCCTGGACGTCCTGGAATCAGCCATTCATACAGTACTTATGGCAACATGACTGAGATACTTAAAATTATTAGAGaccatggcatggttggaCCACCAGGAAGACCTGGGCAGAAGGGAGAAATAGGATATCCTGGTCCCAGAGGACCAAGAGGTCCTAGAGGTGAGCAAGGCATCCCTGGTCTGCCAGGACTTCCTGGTAATGATGGACTAAGAggacaaaaaggagaaaaaggagaAGCTGCCTACATAAATCACAGAAGAAAGAGAAGTACAGGTGTTTAGACTGACAcagaaaatgattaattattttccataaatttaataatttctgtAGCTTTTTTGTTTGCAACTTTTTGTAAGAGCCAAACCATGGGATAGGTAAAGccataaacacactacactcgcagaaatgcagaaatgaaaatacagtGACTCGCTGACAGTCAAGATGTCAAATTTCTTGACATGACAAAATGTATGtacataattcatttgttttataatcCAAATATAGAAATATCGTAGAAGGAATTAGGTTCAAATGTAGTGTTTCATCAATTCTTAATCAAATTTACTTTTTTCTACTATGAATTTTTGAAGAACAATTTTTTAACTacaacattttaacatgttttgTTTGATTATTCAGAACTCTTCATCTTTTTCTAGTTTTGCATAGAAAAgctcttttcatatttttagttTGGGATTTTCCATGTATTGTGAAAagatttatactttttttttaaacatcatttactTCATTTACTAATTATGTTAATGAATTACAGAGTAAATATCATAACAGAACATATTTCATAACTATGTCTCGTGGAGGGCATCGAGTTTTTTACTGTAACTGATGTCAATACTAACACCAGAATGGGGCAGTTGCAGCTCAGCAGTAAAGGCTCTGTACTAGTGCCCAGAAGTTTATGAGTTCAGATCCCAAAACTACCAGAGAGCCACTGTTGTGTCCTTAAGCAAGGCCTTTACTCCTTAAAAGCTCTGTTTTATGCTTGGAAAGTGACTTCGGAAGAAAGTATCTACTGAATGAGTACACGGAAATGGTTTTCTatatgaaagtgaaaaataaagtctttttta

Function

GO:

id name namespace
GO:0008544 epidermis development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU441285 lncRNA downstream 196447 8428604 ~ 8444065 (-) True G372522
TU441222 lncRNA downstream 373323 8261435 ~ 8267189 (-) True LOC113537489
TU441219 lncRNA downstream 436288 8202768 ~ 8204224 (-) True G372471
TU441040 lncRNA downstream 555973 8082963 ~ 8084539 (-) False cars2
TU441021 lncRNA downstream 624124 8016105 ~ 8016388 (-) True G372307
TU441552 lncRNA upstream 105713 8775032 ~ 8788141 (-) True G372742
XR_003403741.2 lncRNA upstream 294266 8963585 ~ 8965621 (-) False LOC113537261
XR_003403742.2 lncRNA upstream 294266 8963585 ~ 8965428 (-) True LOC113537261
TU442113 lncRNA upstream 1090422 9759741 ~ 9759949 (-) True G373288
TU442117 lncRNA upstream 1094300 9763619 ~ 9764526 (-) True G373292
XM_034300158.1 mRNA downstream 29671 8591407 ~ 8610841 (-) False tsga10
XM_034300157.1 mRNA downstream 33672 8591407 ~ 8606840 (-) False tsga10
XM_026932146.2 mRNA downstream 33672 8591407 ~ 8606840 (-) False tsga10
XM_034300159.1 mRNA downstream 34336 8591407 ~ 8606176 (-) False tsga10
XM_026932228.2 mRNA downstream 50094 8572271 ~ 8590418 (-) False cracdlb
XM_026932404.2 mRNA upstream 25218 8694537 ~ 8697313 (-) True LOC113537765
XM_034300038.1 mRNA upstream 41064 8710383 ~ 8740417 (-) True pdcd11
XM_034300039.1 mRNA upstream 41064 8710383 ~ 8740389 (-) False pdcd11
XM_026932249.2 mRNA upstream 74133 8743452 ~ 8752250 (-) False taf5
XM_026932248.2 mRNA upstream 74133 8743452 ~ 8752250 (-) True taf5
XR_004577317.1 other downstream 33672 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 208088 8429611 ~ 8432424 (-) False LOC113537606
TU441267 other downstream 311486 8320984 ~ 8329026 (-) False timmdc1
TU440974 other downstream 724191 7912466 ~ 7916321 (-) False fam155a
TU440780 other downstream 915717 7718263 ~ 7724795 (-) True G372086
TU442201 other upstream 1209524 9878843 ~ 9918740 (-) True LOC117596103
TU442843 other upstream 2201965 10871284 ~ 10872546 (-) False lipt1
trnar-ucu_14 other upstream 2803561 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 4639719 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 4654763 13324082 ~ 13324173 (-) True trnar-ucu_15

Expression Profile