RNA id: XM_026931929.2


Basic Information

Item Value
RNA id XM_026931929.2
length 3176
RNA type mRNA
GC content 0.50
exon number 4
gene id march4l
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11666909 ~ 11690520 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAACGGgctaggaagaaaaaaaaaggagtcatTAGTGAAACATTTACTCACACGAATGAGCTACAGTAATTTAGCTATACATTATGTTGCGAACCAAAGTGTCATTTATCCATCATGAGGGCATGTCAGGTCAGTAAATGTCAAGATATCTTGTTCAACTCTCACAGTATAATAATAGTGGATTTTATAAGTATTCTTAATtaatattgcacttttttttagaaaacaaaacaaaacaaaaacccagATCTCTTCCTGTCCCGTGTTTTAGTTTTGGGAATTGTGAAAACTGCTGTATTGTGTGGAATCGATTCCAGGAGTCGACTCGTTTGATTCGCGACAGCTGAGTGAGAGTCGGAGTCGACTCTGTTCGCTGGAGCGGCGCCGCGTCAGTGGACGGTTATGTGTGTAGAATGTGTAGCGCGGCTCGAACAGAAACATTCTCCTGAAAAGCcgttacatacagtatgtgttagCTTTAGCCACTCTAGCTAGCTGACGGAGTGCGAGCAGTGATTCCGGTTAACAGATTTGTGTCCATTACTCTGACTAGCCGGGATAGTTTGCGACGCTAAGCGGTAAGGTGTTTTATCTCTGCACCTCGTCCATCGTTCAGCGAGTAAAAACGGGCACATGTGGTGCGCTGTCGGTGTCGGTGTCGGTGTTGGATGGTGCCGGAGTTCGCTGAGCCGTTTACCGATGCTGCGGCGCGAAGGAAAGCAGAGAGGCCGCCGCTGTCGCGTCTTGTTCAGTGACCTGAAGGCTTTGCTGCTCaggccaccaccaccaccaccaccgccACCGGTACCGTCGGCCATGAACGGAGCGCCGAGCGCCCACGGCGCTTCTCCGGCGGACCGGACGCGGGACGAGGACgctgccgccgccgccgccgccgccgccgctgaGTGGGCTGGAGAAGCGGAGCGGAGCGCCACGGAGAGTCCGGACGGCGGCAGCTCGAGCGAGGACTGCACCAAAGAGAAGCTCGACGAGAGAGCGAGTCTGGAGAGCTGCACGGAGAGCGGAGCGCGCACACCTCTGTGCCGGATCTGCTTTCAGGGCGCAGATCAGGGTGAGCTGTTGAGTCCGTGCCGCTGTAGTGGCTCGGTGCGCTGCACTCATGAGCCGTGCCTGATAAAGTGGATCAGTGAAAGAGGCTCGTGGAGCTGTGAGCTGTGCTACTACAAGTACCAAGTCATCGCCATCAGCACCAAGAATCCGCTACAGTGGCAAGCGATCTCTCTGACGGTGATCGAGAAGGTGCAGATTGCAGCGGCGGTGCTCGGTTCGCTCTTCCTCATCGCCAGCATCTCATGGCTTGTGTGGTCTTCGCTTAGTCCCTCGGCCAAGTGGCAGCGCCAGGACCTGCTCTTCCAGATCTGCTATGCCATGTACGGCTTCATGGACCTGGTGTGCATTGctctgatAGTGCACGAGGGGCCGTCCGTGTTTCGTATCTTCCACCGCTGGCAGGCTGTGAATCAGCAGTGGAAGGTGCTCAACTACGACAAGCTGAAGGACTCGGAGGACCCTCAGAAGGGCAGCAGCACCCTACGCTCCCTCACACTCCCCCTGAGCAATCGGGCAGGGGTGGCCCCACCCACTTCCCCTTCTCCCTCTAGCTCCGCCCTCACGACAGCTGCCACAGTGACCATCACCCCAGGCACAACTGTGCCAGCGGTCACTGCAGCTCCAGAGGACACCTCCGAGGCGGAGCGTCACTGTGCGTACAGCCTCCTGCAGCTGCTCAGCCTCAATCTCCGAAACCAGGAGCCCAGAAATGCCACAACGCAGCCCAGAAACGACAACCGCGAGCTGGTCATGAGAGTCACCACCGTCTGAGACGGCGAGTGAAGCCAAACTGGAGATATATGACAACTCGGGAAGGGAAGAATGACAGTTGGACCCAGCAGCAGAGACATTTGCTAGCAAATGAGCTCAAGGTCCTTCTGGTACACTTTGGCATTTATGGAAGTAATACATTTTTGAAAGTAAGACAGAGAGGTTTGTTTGAGGATTTTAGTTGTCGAGCACACCTTCAAGGCTGTGTGAGGCAGTGTTGAAAGCTAAAGGTCAAGTTCAgagcaaagtgtttttttaagcGAGTGGCTCATTAGGGCTGATGTTAGTACATGGCCACACAAAGTGGTGAGTATTTTCAAGCACAAGATCCAACAATGCAATGCAGCTCTAATAtgtcacactaacacacacacacacacacacacacaaaacattacaCAAGGTCAAAGTTTGCTATGAGACACCACCAggtaattacacacacacacacacaaagcctaaaatgaaaagaattttGTGGGGAAAAAGATGTACAGTTTTCCACTAATCccaaatgtagtcgatcagccaggacatgtttggtgtccaaGTAGTTTTGCACTAACACTACAAGGCTAAtttagctaacaagtaatggaagtctatgtCATCCAAAATCTTTTCTGGAGATATCTGCCCCAGACCACATCCAGTTTTTCAGTGATGTCATCCAGATTcactgatgtggtttaggacacagtgggatttaacatgaacaaaacttcaAAACTCTAATATTAtgggcagccatcttggatatttttttccccttagcaCCGTTTGATATCATTCTGCCTCCTAGGCCCCGCCTCCCAAAGTTGGACTGCATAATTGCAACAGAATGCTGGGTCTATTCAAGCAATAATACAGTTCCACTTTGAACTTACGCTGGGAAATACAgcttcttcattttatttaaaaatgagaataCATCGATTTGTGCTTGAATTTACGGAAAAGTTTCTGAGTAAGATGGACTAATTATTTGATAACTACATTAGTCTTTTAGCTCCTGTGtaaaagtaaagaagcaaaCGGCGTCAGTCCCGGCTCAGTGACTCTATTTAGGGTGAGTGGAAAATGGCAGGGGTGGGGGGGAAAGGTTTTCTGCCCAACTACACCTTtaagtttacattttaaacacaactgGCTGTTTAGAGAAGGGTCAGTAACGCTGTTAATGGACTCTCAATTCAATAAGAGCCCGGTTTCCACGGGGACGACCCGCAGCCACACTGAAACTACCCAACTAACGTGGCCTGAGTCAAGCGCTCCTGTTTGACGGActcattttgtttacatttgttaaaatgtcagaaaagaaaatacat

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005795 Golgi stack cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0016020 membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K10659 MARCH4_9_11; E3 ubiquitin-protein ligase MARCH4/9/11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443394 lncRNA downstream 70670 11595192 ~ 11596239 (-) True G374371
TU443391 lncRNA downstream 71928 11593966 ~ 11594981 (-) True G374370
TU443231 lncRNA downstream 306488 11358843 ~ 11360421 (-) True G374230
TU443185 lncRNA downstream 424072 11238241 ~ 11242837 (-) True G374198
TU443184 lncRNA downstream 424072 11238717 ~ 11242837 (-) False G374198
TU443528 lncRNA upstream 62054 11752574 ~ 11755115 (-) True G374495
TU443718 lncRNA upstream 244014 11934534 ~ 11943075 (-) True G374657
TU443741 lncRNA upstream 273284 11963804 ~ 11964781 (-) True G374680
TU443757 lncRNA upstream 388371 12078891 ~ 12084032 (-) True mzt1
TU443791 lncRNA upstream 401992 12092512 ~ 12092736 (-) True G374727
XM_026932394.2 mRNA downstream 114187 11546974 ~ 11552722 (-) True alg11
XM_026931632.2 mRNA downstream 123212 11539380 ~ 11543697 (-) True spp2
XM_026932172.2 mRNA downstream 195414 11467404 ~ 11471495 (-) False pld6
XM_034300193.1 mRNA upstream 79326 11769846 ~ 11866324 (-) False vps8
XM_034300192.1 mRNA upstream 79326 11769846 ~ 11866324 (-) False vps8
XM_034300191.1 mRNA upstream 79326 11769846 ~ 11866324 (-) False vps8
XM_034300190.1 mRNA upstream 79326 11769846 ~ 11866324 (-) True vps8
XM_034299877.1 mRNA upstream 201154 11891674 ~ 11937127 (-) True igf2bp2b
trnar-ucu_14 other downstream 193938 11472880 ~ 11472971 (-) True trnar-ucu_14
TU442843 other downstream 794363 10871284 ~ 10872546 (-) False lipt1
TU442201 other downstream 1748169 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 3060069 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 3234485 8429611 ~ 8432424 (-) False LOC113537606
TU444510 other upstream 1618518 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 1633562 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 1634997 13325517 ~ 13325608 (-) True trnar-ucu_16
trnar-ucu_17 other upstream 1635473 13325993 ~ 13326084 (-) True trnar-ucu_17
trnar-ucu_18 other upstream 1637532 13328052 ~ 13328143 (-) True trnar-ucu_18

Expression Profile