RNA id: XM_026932036.2


Basic Information

Item Value
RNA id XM_026932036.2
length 1709
RNA type mRNA
GC content 0.46
exon number 1
gene id gja8b
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 9968451 ~ 9970159 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGGTGACTGGAGTTTCTTGGGCAACATCCTTGAGGAAGTCAATGAGCACTCGACGGTTATCGGTAGGGTGTGGCTGACTGTGCTCTTTATCTTTCGCATTCTGATCCTCGGCACTGCGGCAGAGTTCGTATGGGGCGACGAGCAGTCGGATTACGTCTGCAACACACAGCAGCCCGGTTGCGAGAACGtctgctatgatgaggccttcCCCATTTCACACATACGCCTGTGGGTTCTGCAGATCATCTTTGTCTCCACGCCGTCACTGGTGTATGTGGGCCACGCAGTGCACCATGTTCACATGGAAGAGAAACGTAAGGAACGTGAGGAGGCAGAGCTGAGCCGGCAACAGGAGACAGGTGAAGAGCGGCTGCCAGTTGCTCCTGACCAGGGTAGTGTCCGTACAGCCAAAGAGACCAGCACCAAAGGCAGCAAGAAGTTCCGCTTGGAAGGCACACTGCTCAGAACCTACATCTGCCACATCATCTTCAAAACATTCTTTGAGGTAGGGTTTGTCGTGGGCCAATACTTCCTGTATGGCTTTCGCATCCTGCCTCTGTACAAGTGCAGCCGCTGGCCCTGCCCCAACACAGTCGACTGCTTCGTGTCAAGGCCAACTGAAAAGACTGTCTTCATTATCTTTATGTTAGCTGTGGCCTGTGTCTCACTCTTCCTTAACTTTGTAGAGATCAGCCACTTGGGCCTCAAGAAGATTCACTTTGCATTTCGCAAACCAGCCCAGCCCCAAATTGAGGGATCTGGTGCAGGTGAGAAGCCTTCCATAGCTGTGTCCTCTATTCAGAAAGCCAAAGGCTACAAGTTACTGGACGAGGACAAAACAGTTTCACACTTCTTTCCCCTGACTGAGGTGGCTGGCATGGAGGCTGGGTGTGTGCCCACATCCTATAAAccatttgggggaaaaacagaTGGAGCGACAGCGCCACGGGGAGACATGTCGAAGATGTATGAGGAGACCTTGCCCTCTTATGTCCAGACTACCATGGTGGGGCTCAAAGGAGCTACTGGCGTTATTCGGGTGGACGAGGATGAAATGCCTGGAGAAGAAGACGTGGAAGCCAGCGAGACAATAGAGGACAACAGACCCCTCAGTAGCCTGAGCAAGGCCAGCAGCCGGGCGAGGTCAGATGACTTGACAGTATAAAATTAGATTAAAATTCAACAACATGAAAATGTAATCCTACTGAAGAAAGATTTAAAAGGTCTTAAGGCAGTTGTAATGACACATGTAAACATCTTTCTATTTAAACATGCCATGCAATTTTTCCCCAAGAATACCTGAGTTCGTTAATTTTGTACTGTCTTTATCAAATGAATTGGAAACAACTAACTAACTTACCAGAAGAAAGATTCTCAGTAGGATTCATACGGTGATGAGCAATAAGGCATGTTatatattagcaaaaaaaagttGGTTTTTTAAAAACCATATTTTCTATCcagaattttaattttacattctAATCCAAGTAGCCAAATtctaatgtttacattttttccattaGCCATTTAGTTCAAtgttgtatgtatgttttattactATTGTTTTGGGATTTCGGCAGATTATTTCTGCAATGCTGTCAGGGTAACATCATTTTCACCTCAATAACTCATCCAAATACAAGTACAACaactgatcagtaatggtttcactctgtgtgtgtattgtccTTTCTGTAATATCCA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0007154 cell communication biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005922 connexin complex cellular_component
GO:0055077 gap junction hemi-channel activity molecular_function

KEGG:

id description
K07617 GJA8, CX50; gap junction alpha-8 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU442236 lncRNA downstream 3908 9962422 ~ 9964543 (-) True G373398
TU442160 lncRNA downstream 136126 9831607 ~ 9832325 (-) True G373327
TU442150 lncRNA downstream 142758 9825461 ~ 9825693 (-) True G373317
TU442133 lncRNA downstream 168541 9793369 ~ 9799910 (-) True G373303
TU442132 lncRNA downstream 168541 9793426 ~ 9799910 (-) False G373303
TU442515 lncRNA upstream 52378 10022537 ~ 10024885 (-) True G373629
TU442537 lncRNA upstream 114280 10084439 ~ 10084737 (-) True G373649
TU442549 lncRNA upstream 156666 10126825 ~ 10127603 (-) True G373656
TU442548 lncRNA upstream 157024 10127183 ~ 10127603 (-) False G373656
TU442550 lncRNA upstream 157024 10127183 ~ 10127889 (-) False G373656
XM_026932071.2 mRNA downstream 7081 9939296 ~ 9961370 (-) False fstl1a
XM_026932070.2 mRNA downstream 7081 9939296 ~ 9961370 (-) True fstl1a
XM_026931646.2 mRNA downstream 31278 9931449 ~ 9937173 (-) True lrrc58a
XM_026931714.2 mRNA downstream 40474 9919822 ~ 9927977 (-) True stn1
XM_034299958.1 mRNA downstream 40777 9919822 ~ 9927674 (-) False stn1
XM_034300288.1 mRNA upstream 23542 9993701 ~ 10043255 (-) False bcl9
XM_034300286.1 mRNA upstream 23542 9993701 ~ 10043255 (-) False bcl9
XM_026931972.2 mRNA upstream 23542 9993701 ~ 10006843 (-) True bcl9
XM_026932341.2 mRNA upstream 134373 10104532 ~ 10116972 (-) True morc3b
XM_026932342.2 mRNA upstream 134373 10104532 ~ 10116933 (-) False morc3b
TU442201 other downstream 49711 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 1361611 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 1536027 8429611 ~ 8432424 (-) False LOC113537606
TU441267 other downstream 1639425 8320984 ~ 8329026 (-) False timmdc1
TU440974 other downstream 2052130 7912466 ~ 7916321 (-) False fam155a
TU442843 other upstream 901125 10871284 ~ 10872546 (-) False lipt1
trnar-ucu_14 other upstream 1502721 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 3338879 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 3353923 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 3355358 13325517 ~ 13325608 (-) True trnar-ucu_16

Expression Profile