RNA id: XM_026932087.2


Basic Information

Item Value
RNA id XM_026932087.2
length 6907
RNA type mRNA
GC content 0.40
exon number 21
gene id si:ch211-91p5.3
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 7069178 ~ 7082854 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAAGAGTGGAAAAGTGTGACTATCTGGCAACCCTAGGGGTTAGTTGGCTTTGCCGGGTTGTTGGGTGAGGTACTGTCATTTCTAccataacaataacaataacaataagaagaagaagaagaagaagtgaaacAAGAAGAAGAGCTGTTCTCTGTGATCTGCAGGCTTAATGGATTCCTACAAACGCTTCAGCGATGAAAACTACAAGCACTGGCTGCAGACGGCAGAGAGTCTGTATATACTGAGGAGTCACATTCGCGAGTTTGTGGAAAACGAAACCGAAAGCTATCACAGGTCTCTTCGGGAAACGCTGCAAGATGAAATCTGTACATCAAAATGTAGTCTCCATAAATGTCCACCAAAATCAAAAAAGTTCCCAATTTGTGATAAGTGTCACAAGTGGAAAGATGCAATCCTGGACAATCATAAGCATAAGGGTATTGACATACCCTGGAATAACTGCCAGCCGTACCTGTGGCCAACAGACAAATGGGAAGTTGCCAAGGTTTATATGCTACGTGGAACAAAAAACCATCACAGTTTTGATCAGTTTGatatttctgccattttgaacTTCATGTATCACTGCAAGCACTTTGAGGCCTTTGCAGAAGGCCAGTACCTAACCAAGGTCATCAATGTGAGAAACAAAGTGATGCATTCCCCTGACTTCAGGTTAAGCAAAGAGGAGATGGATGACAGTATAAAGAATGTTCAGGAGCTGGCTAAGATTCTTGAGAATCATGCGCCTGGACTAAAAACCATATCAAAACAGATACAGAAGTTTAACAGAATTTTGGAGAGGTGTAATGGACAGGTTTCCCAGAATGACAGCAAGGAAGAAAGACTAAAGCTGCTAGACAGAGAGCAACACGCCCTGAAGGAGAAGATTGAGTCCCTGGCCCAATGCTTTGAAGAAGACCAAGACATTGAGCGCAAACTTCAGGAAGAACTGCAGGGCATGAAAAATTTCCTGGACCAAAACAAAGATTTGCTGGAGAACCTGGGCCCTCAATTAAACCGGTTGAATGAAATACAAGAGAAGGTGGACAAGCATGATCAGGATATCAACAAACTGTCAAACAGAGTGGACCGGCTGGAAAACATTGCACCTGACCCAGTGTTCAGTAGTGATGCACTTAAGTTCAAGAATCATGTGTTTGAAGAGGCTCGAAGAAGGAACATGCCAGAACCTGAATTTACAGAGGAATGTGAAGCTAGTGGTTACAGGGGTATTGTGAATGTGAATGGACGTACATTTAGAGGTTCACAGGTGTGtacgaataaaaaaaatgcccaCCAAGAGGTTGCTAAGATAGCCCTGGAATACATGAAATCCCACCCTGAGTGGAAAGAAGAGCCAACTGAAACCACTTCATCAATATCCTCATCTACAGCATCCTCAAGCACCATCTATCACGGTATTGTGACTGTGGTCCTCAACAACCAAGAGATTGTGTCTGATGGGTGTAGTCAAGAGGAGGAAGCCACTGAATCAGCTTACAGGAAACTAGCCTGTCAGTTTGGCCTGACTTCTCTTGAAGCAGGTAATACTTTTAGGACAGCGGTCCTGGAGCATTTTCAGAGGTGTAATTTCCCAAAACCACAGGAACGCTCAGTTTGCCAAGATGATAAGGTCTTCTGCAAACTCCAGATCAGTGGGCCTTTCACCTTTTATGGCAAAGATTGCTCCTCAAAGAAGAAACAGGCAGAACATCTGGCAGCTAAGGTTGCTCTGCAGCATTTGTCAGGACTCTTAAACTGCAAGTCTTTGGCTAATGCTGATGACAACTGGAAAGGATTTCTGAAGGAACGTCTAGATGCTCTTGGTCTGCCGCAGCCTGAATatgattttacattaaaaaaagtatgcaTCGGTCATGAAATAGAGGGTTCTATTACCAGTGAAGATGATAATTCACACATATCCAGCAGTGTCACTGCGGTCCAGGATCTACCTACAGCAGACACAGTCAGTGCTGTTGAGTGTCATGTGACAGAAACCCTGGACTGCAGTCATCCAGAGACGCCCAGCCAAGCCCCCAAAGTGGATTCTACAGGCACTATTTATTATGGTATTGTGACTGTTGTCCTCAACAACCAAGAGGTTGTGTCTGATGGTTGTGTTCAAGAGGAGGAAGCCATTGAATCGGCTTACAGGAAACTAGCCTGTCAATTTGGTCTGACTTCTCTTGAAGGTAAAACAGCGGTGCATGAGCATTTTCACAGATGTAATTTCCCACTACCACTGGGACATTCAGTTCATGAAGGCGATAAGATCTTCTTCAAACTCCAGCTCACTGGGGATTTCACATTTTCTGACAAAGATGGCTCATCAAAGAAGAAACAGGCCGAACAGCAGGCAGCTAAGGTTGCCCTGCAGCATTTGTCAGGACTCTTAAACTGCAGTTTTGAGGCTGAAGCTTGCAAAAACTACAAAGTTTTTCTGAAGGAACGTCTAGATGCTCTCCATCTCAAAAATCCTGTGTACACATGTAAGGAAAAGAGAGGAGTCAGTGAAGCAGTGGAGGGTCCCAGTACAAGTGGAGATAATTCACACTCATCCTGCACGACAGCCATTAGCGAAAAGGTTTGTCTTCAACCAAAGGACACTGTCAGTGTGACAGAAACTCAGGATGCAAGTCCTCCAGACATATCCAACAAATCCCCCAAGTTTGATGATACAGccATCAACACACTTCTAACATTGTTTCATCTCAAGGCTCCATCTGTAACAGTAGAGAATGTCAGCACTGAGATGGTTTTCAGCTGTCATGTGGACATAAACTTGGACAAATTCATGTTTCAGAACAACAATCAATACACCGCCAAGAAAGATGCCATTCGTAAAACCTATTTATTGCTTGGGAATGCATTGGGAATTTCCAAACACAAATTAGACGAAAACAATGCTTCCATGCTGGTGAAACAGGATTTTTCCCAGAAGTCTCTCACCCTTCCTAAGGAAGTCTTTGAAGACAACAAGTGTTCCCTTAATGATATAACATACAGTTTAGTCTATGATGGAAAAGgCTCCACTGAGGCAGAAGCAAAGCAGGCTGCCTTGCAGAAAGCCTTGGACATGCTAACCTTGCTCTTTGGGTTCAAGTCTTTGCCAAAGTGTAGCACAGTTGAGGAAACGGAGGCTCAGATTAATACCTTACTAAGAACAAAAGGTCAAAAAGACCTCAtttattcacacaaacacaacctgTATAAATGCTCAGTTGAGCTCCTGTTCAAAGACTACACCATGGAGAGCAAACacgaaaagaggaaaaaagaaaatcttaatCATCTCAGTAGCCGCATTCTTGGCCTGCTAGCGGTGGAGCCAGAGCCGAATACTGCATCTTTAAGAAACTGTCTAGATGACTGGTTTAAACAGAAGAATCTGAAGCAGCCTGTGTTTGAGAACACAGAGGAGGCTCATGGATCGAAAGTCACGTTCTCTGTCAAAGTTTCCTGCTCAAACCCAAattGGGAAGACAGCATGAAAGTTGCAGAAGAAAAGCTGGTCGATGAACTGAGGGAAAGGTTAAAGTATCTGACTGATTAAGGCGAAGAGTATTATGAGATTTggtacagaattttttttccctttgtttaATTGTTCTTGTGTGAATGATGAatcttccaggatgacagtATTTTATGAAGGAGGCTTAACATTATCATGGGTATCATGGGCAATTACCAACTTAGGCAGTTACCTTAAAATTACCAAGTTTCTTTTCTAATTATTATCAGTGATCATCAACCATCAATTCACTTGGCATGTCACCAGGTTCTTTAAGATATCTGTTGTTAAACCATTCCTTACGAAACCACATTCTTGACCCCTCCAAGAGTGCTgttgtagtgaatatcagcatggctgtgattacctaTGGCACTCGGCTTGTGACCTCATTGCCTATGGCtcaatcacagccatgctgattttCACTACAACAGCACTtttgcttgtgcgatattgcgTTATCGatcaatcaaatcaatcaatcaaaatttatttatataccacatttaaaaacaacaggtgttgaccaaagtgctgtacaaaactAACCAACATGTAATAATAGTAAGAAAAttaagattaataaaataacaccagAGAATGACACTTGATATTACATTACAATGACTCATAAGCAACGGAGAACAGGTAGGTCTTTAGTTTAGACTTAAAAAGATCTAGGGTCGGACAAGACCTAATCTGTAATGGCAAAGCATTCCAAAGGCGAGGGCCCGTAACAGAAAATGAGCGATCACTCATAGTTTTTTTAGCATACATTCTTGGAAATTAAAAACTACACTCTAGATGCTTGTTGATCTTTTGATTGACATGTAATTAAGATTTTTACAACTGCTTACCATCATCTgaaaaacacagccataataagAAATATGCTAATCCTACAGGGCGTCTGAACACTTTGAGATGGGCTCATAGATGCCTAGATTGGAGAGATTCACCCTGATTGATGGAGAAAAAGACCAGGGCCAGTTTTGTTGTCTTGGATTCTTAGCTGTGGATGGGTCCCCCTACCTTatttcagaatgcagcagcctgTGTACttatgaaacaaaaattcaGAGCTTATTACTCATCTTATGTAAGCTACATTGGCTGCTAATTAAATTTTGCATTGGAAACAAAGTCCTGCTCCTGATGTTTAAGGCTCAGAATGGTTTAGCTCCAGCATATCTTGCTGATCTCCTTAAGCAGTATAGTTCATCATGAGTACTTTGCTCAGTTGAGGCATTACTGTTAGTCCAGTCATAGCTCACCTGGTGGAATATGAAAGCCATCTTTAAAAACATACTTGATTAACTTGACCTATTCTAAGTTCTTGTGACTTAGTATGTTAAGAAACTCACCTTTCAACCCTTTAAACAAGTATTTGCTTTTAATGCGATCAGTATGTGGTGATATGTGGTGGCTTATGACCAATCAGTTCCATTGATACTAATTGAGAGTTTGAGAGTGATTAGCATGTTTTGATGATAAAATGTTCAttgcatatatttttattgcaggTCTACACTGAATATCAATACAGAGTTTTTAACCAAGAGGAAATGAGCTCTTTGTATGTAACCGAAATGTACAGCCAGTGAATTCTGTTTATTAACATTCTGCATGTTTTCTCTGTAATGCCTTTCGATCTCTGAATCAGCCTGATATTTAAGCAATAacacacaagcaagagtgctgttatactgtGTATCACAGCATGGCTGATTTGGTCGGTAATCACAgccgatattcagtacaacagcacaatTGCGAGTGGggtattgcttttataaaacagtttgatcaataagaaattaatatcaagtaactgacatttcagacacagtatggccaaatattttgtttatttttgcttcattaaatgaaatatttcccAAAGAAGCCGCAGCTgcatagagtgttgtgtgttgtctgactgacagcccatagTAGTAACGGTTTCAATGTAACTAACTATCGCTAGAATTATATGTAGCAAACtcagacaagtggagtgatacaaacagtgaaatgtcccagcaCTGTTATACTTAATATAAGCACTTTTGGAATGCCGCttaaccaatcaaattagtggactggaactaacagTTTAATAACTGAATTTCTTTTCCACATGGTTTTAAAAGTGCACTTGTATCCATGTCTCCATATTTGTGACACTAAATTATTGACAATGAATATAGTGACTGTACACACTCAGTTCTTAAAGGAAGGAGAGGAGATGATTTGATTGGATATCTCAGCACTCCGCACTCCTAACTGCATCTCTTAATActgtattcattcatattcttttctttattacatTTGTGCTTCTCTGCTGTTCTTATGTGTTTTTTATGCATATGCATCACCCATGGTCTTTTATGAGTCATATGAGAGAAGGAGGGGAGAGGCCAGGTCTACTAACTGAAAATCGTTTGATGCTCTGTTAAAAAAAGTGGAGGCGCCAGAAACACTCTTCTAcaagttaaattttaaaatgttaatgtttaacatAAGCGGGGGTATGTATTATCCTGGTAGGGGGGGTAGGTATTTCATTATCCTGGAATCTTATCcaagaaaaaaagtgttttgtagatacactttcattttaattattataatctaTATTGGTGAAGggaatctttatttatttatgtataacaGGGTTGGTACAGGGTTGATACAGAACACTTGAACACTGATGGTAAAATTGGGTTGTATGTTTTATTGGGTTGTATCAGTACAGTTTTCATATGGGGTGTTCTTTTTAAGGTCATCACCTTTTACAGTTAGGATGCAGTGTTGCTTTCCAGCTGAATGCATGTAGCTGGAATAAAAGTTCAGTTCCGTATGGGTTTCTTACCACATCctgaaaataagacaaaaagctACAGAAAACAATTGCTGCACAGGAAACAGCGTCTGTGTTCACACCAAAAATGTGAGAACAGTCTTGATTGTCATCCAGGTTATGTAGCAGAActgaaaaaacacatgaaattgAGGTACTACATGTAGGTCATTTTTGGTAAGATGGCCTTGTGATTCCACGGTGTATCACCATGTACCATTACAAATGCCTGGACATTCCTGTCtctactgtatactacacacccTTTTAATTTCcctcagttgttttttttttcccagtactTGATACcatattacaattattactaTAACACTATGAAACGTTTTgcccttttttctgagaatttccttttaatattttaatcttttatccaatttgtttgttttctcttacCACTTTGTATTCAAATCTGTTTTAATTCACAGAGAAGCACTTTGtaaacttgttttaaaaaagtctccaataaaaaatattattattattattattatcacca

Function

GO: NA

KEGG:

id description
ko04621 NOD-like receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU440274 lncRNA downstream 167835 6891766 ~ 6901343 (-) True G371634
TU440265 lncRNA downstream 187398 6879870 ~ 6881780 (-) True G371625
TU440266 lncRNA downstream 194758 6870572 ~ 6874420 (-) True pspc1
TU440272 lncRNA downstream 201218 6867744 ~ 6867960 (-) True G371632
TU440232 lncRNA downstream 254107 6808493 ~ 6815071 (-) True G371595
TU440449 lncRNA upstream 68584 7151438 ~ 7153159 (-) True G371787
TU440456 lncRNA upstream 100322 7183176 ~ 7183386 (-) True G371793
TU440604 lncRNA upstream 274457 7357311 ~ 7378538 (-) False LOC113537388
TU440608 lncRNA upstream 328127 7410981 ~ 7415018 (-) True G371929
TU440643 lncRNA upstream 384935 7467789 ~ 7468460 (-) True G371964
XM_034299966.1 mRNA downstream 709 7058835 ~ 7068469 (-) False LOC113537271
XM_034299965.1 mRNA downstream 712 7058835 ~ 7068466 (-) False LOC113537271
XM_026932381.2 mRNA downstream 44172 6958020 ~ 7025006 (-) True LOC113537750
XM_026932383.2 mRNA downstream 45418 6958020 ~ 7023760 (-) False LOC113537750
XM_026932382.2 mRNA downstream 83793 6958020 ~ 6985385 (-) False LOC113537750
XM_026932060.2 mRNA upstream 2072 7084926 ~ 7090530 (-) True LOC113537541
XM_026932363.2 mRNA upstream 9948 7092802 ~ 7096706 (-) True pcdh8
XM_026931957.2 mRNA upstream 73726 7156580 ~ 7181482 (-) False sugt1
XM_026931956.2 mRNA upstream 73726 7156580 ~ 7181481 (-) True sugt1
XM_026931775.2 mRNA upstream 101948 7184802 ~ 7201325 (-) False LOC113537349
TU440391 other downstream 647 7058835 ~ 7068531 (-) True LOC113537271
XR_004577289.1 other downstream 711 7058835 ~ 7068467 (-) False LOC113537271
XR_004577329.1 other downstream 705975 6358639 ~ 6363203 (-) False LOC113537742
XR_004577328.1 other downstream 1035785 6019687 ~ 6033393 (-) False tpp2
XR_003403780.2 other downstream 1116865 5942429 ~ 5952313 (-) False LOC113537623
TU440780 other upstream 635409 7718263 ~ 7724795 (-) True G372086
TU440974 other upstream 829612 7912466 ~ 7916321 (-) False fam155a
TU441267 other upstream 1238130 8320984 ~ 8329026 (-) False timmdc1
TU441284 other upstream 1346757 8429611 ~ 8432424 (-) False LOC113537606
XR_004577317.1 other upstream 1508553 8591407 ~ 8606840 (-) True tsga10

Expression Profile