RNA id: XM_034300158.1


Basic Information

Item Value
RNA id XM_034300158.1
length 2701
RNA type mRNA
GC content 0.51
exon number 20
gene id tsga10
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 8591407 ~ 8610841 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTTGATCGCTAAACTCTGGCTTGAACTCATTGCTTTCAAGCAGGCCTGGTGTGCATAATGCCAGGTACTGGGACAAATGTTCAGTTTTACCCCTATAATGGCTGATGAAGAGGCATTAAAGCAGGGGCTGAGAGCAGAGGAAAGTCAGCAGGGGGAGCTGAAAGACTACAAACCAACACAACTGCAGAAACACAGCACGACTGAGCAGAGTGCTGCTGAGAATATAGACCAGAAGATCACGTCACAGAACCACACTGTCATCATCCCTTCTCCCACCAAGGAGAACGTAAGAACCGAGTCTCCACAGCTGGATGAAGATGACCAGCAGAGCCAGCTGAGCTCCGAGGCAGACCAGAAGCAGGATCTCCAGACTCTGCTCAAGCAGCTGCAGAGCGAACGGAGTGATCTGCTCACACAGGTGGAGCATCTGTGTCTCACAGAAAGCGGGCAGGTTACAGACAACACAGGGACACGTGGCTCTTCTCGTAACAGTTCTGTGAACAGTTTAGAGGAAGCTGAAAGAATGAAGAGCGCACTGAAGTCCCGGAGATCAACTAGCCCTATTCGGCAGCCCCCTGTGAAGGGAGGCACATATGACTCAGAGCTGATGAGAGtgctgagagagagggacgagATGCAGAGTATGCTGGATAAGTACGAGCGCCACCTGTCTGAGATCCAAGCCAACGTTCGGGTGCTTACAGCCGAGCGGGACAAGACCAGAATGCACTATCACCAGGCCCAGGAAGAGATAGCAGAACTCCGACGTGAGGTGTTGAGAATAAAGGCATCTCAGGGATCCAAACACAGCGTGACGGCTCAGACTATCCTGAAACGCCtggaggcagagagagatgaggCGATGTCCGATCTTCACCGCatgagcacagagagagacagcctgagagagagactcaaGATCTCTCAGGAGACAGCGATTAGTGAGAGAGCTCACTTGGAGCAGAGGGTGGAGGACCTACAGAATGCCTTACTGACTCTGGAGCAGGAGCGAGCTGAGCACAAGAGCAGACAGGCGCAGATGAGGGAGGCCATGATGGATCTGGAGGAGCAGGTGAACACGCTGGGCAAAAAGCTTGCTACTTCTGAAGGTGAACTCAGCTGCCTCAAGAATGAATGCAGCATGCTCAGGCTTTCTAACACTCAAACAGAGAATACTCTGAGTGAGACTCAGAAGCGGCTGATTAACAGGATTGGAGATCTGCAGCGAGTGCAGAATAAGAATAAACAGCTGGATGAAAGGAACGaGTCTTTGCTGAAGGAGGTATCTGTTCTCAAAGGGGAGCTGAGTGTGCTGCAAAATACTGTTTCTGAACTGAACCAGCACAGAGATACTCTACAGGAACAGCTGGAGAGAAAGAATAACCTGCTCTGCTCCACTAACAAAGAGCTGGATGACAAGGAAAACTCCATCTACAAGATGAACCTACAGATGGAAGATCTGGAAGCCTCTCTAGAAGCTGCGAAGGAGACAGTAAGCAGCAGAGATCGAGAGCTGGACGTGATGAGGAGAAAGCTGTTGGACTCAGAAGATGAGCTGAATGCTGTACTGAAGCTCAAAGATGCTACGCTGAGAGATAACACACAGCTCCGAGACGAGCTGGACCGAGTGCGTCTAGACAACAAGgctTTGCAGTTCAAAGTAGATGAGGCCGCTCGTGAGATTGAGGTTTTGGAGAGGAAAGTGCAAAACTATGTGTCTGACATCTCCAGTATCGAAGACCTACTGTCCTCCAAGGAACGACAGTGTAAAGAGCTGCAGGAGTGTCGGATGGAGCTGAGAACCTCAGGTTCAGAGAAACGCAGACTCAAAGAGAGAATAGAAAGTCTGGAGAGCAGTCTGCAAGAGGCTCTCAGTGCTGAGCAGAGCTGCAGTGCTGAGCTCAAACAGCTGAAGTCCACACTGGAGAAGCAGGAGGAAGAGCTGCGGCAGATGCAGAGCAAGcacttatacacacaccacGACTTGGAGAAGACCCGCGACCTCTGCGTCAAACTGGACTCTGGCAAAGAAGCGGTCCAGCAGGAGCTGGAGTCGTGTCGTTCTGAGCTGGAGCTCCTGAGGAAGCAGCTAGcgaaagagcgagagaaagaatTACACAGACAGCTCAGCTCTCAGGAGAGGCTTGTCGAGATCCAGCTCCTCAGGGACAAACTCACTGTAGCTGACAGCAAGGCGAGCACTCAGAGCAGAGAAATGGCTCAGTTAAAGACTCGGTCAGCACTGTTAGAGGCTGATCTCGAGGCCACCCGGAGGCAGCTGAACACAGAGCGTGAAGAAAGGGAACGAGCAGTGAAGGAGCTGCGCAGACTTGGATTCTCCTCACCCCTTTGCTCTCCGATCTTCTCCTCCACGCTGCGCACTCCTCCCTCCCCTGTCCATCACTCCCTCAGCCCTCAAAGATCCTATTCACCTGAGCGTTCACATCACGCCACTCCTGACCACCTGCCACTGAGACGCTCACCTGACAGGAGTGTGACGTTCAGAGACCAGTATGACTAAGCAGACGTGGACTGGATAGCTTTGGAAGCACATCAGCTGTTCTGTGACACCACTATGTGCctgctttattaaataaagcattttatatttgaATCAATTTCATGTGACTCACTCTTGGAGCCATATTAGCACTGAATATTAGTAACTGATATACAAATGATGACATTGTTTTGATTCAA

Function

GO:      GO:0051297

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU441285 lncRNA downstream 147342 8428604 ~ 8444065 (-) True G372522
TU441222 lncRNA downstream 324218 8261435 ~ 8267189 (-) True LOC113537489
TU441219 lncRNA downstream 387183 8202768 ~ 8204224 (-) True G372471
TU441040 lncRNA downstream 506868 8082963 ~ 8084539 (-) False cars2
TU441021 lncRNA downstream 575019 8016105 ~ 8016388 (-) True G372307
TU441552 lncRNA upstream 164191 8775032 ~ 8788141 (-) True G372742
XR_003403741.2 lncRNA upstream 352744 8963585 ~ 8965621 (-) False LOC113537261
XR_003403742.2 lncRNA upstream 352744 8963585 ~ 8965428 (-) True LOC113537261
TU442113 lncRNA upstream 1148900 9759741 ~ 9759949 (-) True G373288
TU442117 lncRNA upstream 1152778 9763619 ~ 9764526 (-) True G373292
XM_026932228.2 mRNA downstream 989 8572271 ~ 8590418 (-) False cracdlb
XM_026932229.2 mRNA downstream 11482 8572271 ~ 8579925 (-) True cracdlb
XM_034300034.1 mRNA downstream 22372 8556011 ~ 8569035 (-) False LOC113537579
XM_026932136.2 mRNA downstream 23931 8556011 ~ 8567476 (-) True LOC113537579
XM_026932280.2 mRNA downstream 37099 8529482 ~ 8554308 (-) False LOC113537664
XM_026931823.2 mRNA upstream 29671 8640512 ~ 8669319 (-) False col17a1a
XM_026931824.2 mRNA upstream 29671 8640512 ~ 8669319 (-) False col17a1a
XM_026931822.2 mRNA upstream 29671 8640512 ~ 8669319 (-) True col17a1a
XM_026932404.2 mRNA upstream 83696 8694537 ~ 8697313 (-) True LOC113537765
XM_034300038.1 mRNA upstream 99542 8710383 ~ 8740417 (-) True pdcd11
TU441284 other downstream 158983 8429611 ~ 8432424 (-) False LOC113537606
TU441267 other downstream 262381 8320984 ~ 8329026 (-) False timmdc1
TU440974 other downstream 675086 7912466 ~ 7916321 (-) False fam155a
TU440780 other downstream 866612 7718263 ~ 7724795 (-) True G372086
TU440391 other downstream 1522876 7058835 ~ 7068531 (-) True LOC113537271
TU442201 other upstream 1268002 9878843 ~ 9918740 (-) True LOC117596103
TU442843 other upstream 2260443 10871284 ~ 10872546 (-) False lipt1
trnar-ucu_14 other upstream 2862039 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 4698197 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 4713241 13324082 ~ 13324173 (-) True trnar-ucu_15

Expression Profile