Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034300268.1 |
| length | 1329 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 4 |
| gene id | pld6 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047620.1 |
| NCBI id | CM018566.1 |
| chromosome length | 19313417 |
| location | 11467404 ~ 11471543 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0030719 | P granule organization | biological_process |
| GO:0043046 | DNA methylation involved in gamete generation | biological_process |
| GO:0007286 | spermatid development | biological_process |
| GO:0034587 | piRNA metabolic process | biological_process |
| GO:0008053 | mitochondrial fusion | biological_process |
| GO:0016042 | lipid catabolic process | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005741 | mitochondrial outer membrane | cellular_component |
| GO:0004519 | endonuclease activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0042803 | protein homodimerization activity | molecular_function |
| GO:0035755 | cardiolipin hydrolase activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU443231 | lncRNA | downstream | 106983 | 11358843 ~ 11360421 (-) | True | G374230 |
| TU443185 | lncRNA | downstream | 224567 | 11238241 ~ 11242837 (-) | True | G374198 |
| TU443184 | lncRNA | downstream | 224567 | 11238717 ~ 11242837 (-) | False | G374198 |
| TU443180 | lncRNA | downstream | 229973 | 11237062 ~ 11237431 (-) | True | G374196 |
| TU443094 | lncRNA | downstream | 319731 | 11147454 ~ 11147673 (-) | True | G374111 |
| TU443391 | lncRNA | upstream | 122579 | 11593966 ~ 11594981 (-) | True | G374370 |
| TU443394 | lncRNA | upstream | 123805 | 11595192 ~ 11596239 (-) | True | G374371 |
| TU443474 | lncRNA | upstream | 197606 | 11668993 ~ 11669256 (-) | True | G374442 |
| TU443528 | lncRNA | upstream | 281187 | 11752574 ~ 11755115 (-) | True | G374495 |
| TU443718 | lncRNA | upstream | 463147 | 11934534 ~ 11943075 (-) | True | G374657 |
| XM_026932090.2 | mRNA | downstream | 2782 | 11448379 ~ 11464622 (-) | False | rab3da |
| XM_026932091.2 | mRNA | downstream | 5727 | 11448379 ~ 11461677 (-) | True | rab3da |
| XM_026932139.2 | mRNA | downstream | 21310 | 11434514 ~ 11446094 (-) | False | tspan34 |
| XM_026932140.2 | mRNA | downstream | 22468 | 11434514 ~ 11444936 (-) | True | tspan34 |
| XM_026932358.2 | mRNA | downstream | 57290 | 11404116 ~ 11410114 (-) | True | psmb13a |
| XM_026931632.2 | mRNA | upstream | 67993 | 11539380 ~ 11543697 (-) | True | spp2 |
| XM_026932394.2 | mRNA | upstream | 75587 | 11546974 ~ 11552722 (-) | True | alg11 |
| XM_026931929.2 | mRNA | upstream | 195522 | 11666909 ~ 11690520 (-) | True | march4l |
| XM_034300193.1 | mRNA | upstream | 298459 | 11769846 ~ 11866324 (-) | False | vps8 |
| XM_034300192.1 | mRNA | upstream | 298459 | 11769846 ~ 11866324 (-) | False | vps8 |
| TU442843 | other | downstream | 594858 | 10871284 ~ 10872546 (-) | False | lipt1 |
| TU442201 | other | downstream | 1548664 | 9878843 ~ 9918740 (-) | True | LOC117596103 |
| XR_004577317.1 | other | downstream | 2860564 | 8591407 ~ 8606840 (-) | True | tsga10 |
| TU441284 | other | downstream | 3034980 | 8429611 ~ 8432424 (-) | False | LOC113537606 |
| TU441267 | other | downstream | 3138378 | 8320984 ~ 8329026 (-) | False | timmdc1 |
| trnar-ucu_14 | other | upstream | 1493 | 11472880 ~ 11472971 (-) | True | trnar-ucu_14 |
| TU444510 | other | upstream | 1837651 | 13309038 ~ 13315296 (-) | False | gyg2 |
| trnar-ucu_15 | other | upstream | 1852695 | 13324082 ~ 13324173 (-) | True | trnar-ucu_15 |
| trnar-ucu_16 | other | upstream | 1854130 | 13325517 ~ 13325608 (-) | True | trnar-ucu_16 |
| trnar-ucu_17 | other | upstream | 1854606 | 13325993 ~ 13326084 (-) | True | trnar-ucu_17 |
