RNA id: XM_026932228.2


Basic Information

Item Value
RNA id XM_026932228.2
length 2959
RNA type mRNA
GC content 0.45
exon number 11
gene id cracdlb
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 8572271 ~ 8590418 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAATTCACAGCGTTCGAACACCTGCAGGTCGGAGATGGTCGCGCGCTCCACCGGTGCAGATGTCAGTGATGTAATGGCAACGGATGGTGGTTGTTAGTGTATGTGTGGGCACAGCCTTCTTCCCTGAGAGACGGAGACAAACAAGGGACAAAAAGGAAACCAcagaagagagtgaaagaagTGCTTACTGAGACTTCACGTCACCCTGCTGATATAGCGATGGAGTCCACCCAAGGAGAAGTGAGTGGAAACACAGAGGATGTCACAGGGAGGAAGAAGTCAAGGTTCAAGTTCCTCAAAGTCCGTCTTTTTGGGCGTCTGAAGAAAAAGGATACGGAAGGACGGATGAAGCAGAGCCAGTCTGCTGGTGATGTTACTGCACAGGACGGTGGGAGAGGTGGGGATGACTCAGAGGATGACTGTCACTATCCAGAGGGGACATTAGGCTCCAGAGCATTGTCTCATGACAGTATCTTCCTGGCTGATCAGGTTCAGTCCTCACAGCCAACGCGGGTCCTCTCACAGGAGAATGTTCACAGCAAGATTAAAGCTCTGCAGTTGAAGCTACAGCAACAGAACATGCGACTGGCTCCTCCAATGTTGATTCCTGGAAAGCGAATGGAAGACTCCGGAACAACTTCTGAGGATGATGGCTTACCTCGTAGTCCTCCTGAAATGTCCTTCCAAGAGGTAGCCATGCAAAGAGGAGCCTCTAAGTATCCTGAGGCTAAAAAACATCTCAGCTGGTTAAGTTTAGCAGGAACAGGcagtgaagaagaagagcagGGTGGTTTCTCACAACCCTCATCAAGACCCCTTTCTCCAGTCCCCCAACTGTCACCAGAAGAATCACCCTCTGCTGGTGTGGATTTCACAAGCCCCGCCCAGTATGTCCCCATCTTAGACAATTCGGCCGCTCGTCATCGCATGTCCATCAAGCCCAGGAATCAACGAGCTAGCaccagagggaaaaaaacacctAATCTGTACCGTCCTCAGTCCAGCAGCATGAACAGTCTGAATCAGTCATTTTCAGAGAAGGAAGAGACAGAGCAAAGTGTCACACCTATGGAGCTCATGCACCATTACTCCTACACTTCTGAAGATTCAACCCAAGCTGAGGAACCTGTATCACCTTCTTCCAGTGTACACGTACAGGAAGAACCAGAGAAAGTGATACCAATGGATTGCAGCCCATGTAGTCCATTAAACAACAACGCTACAGAACCGTTCCAAAATGAAGACAGAACCAACACCACTTTATCGGTGTACTCTGATGAGATTACAGCCCAGCATGCCTCAAACAACACCAGAGAACCCCTGGCAAAAGAATTTTCAAATAATAACCAATACACAAATAagattaatgttaatgaaaagCATCAGGCCAGTACTTCTTTAATACCTCTGTCCATTTGTCCAGTGGATATAGAAAgtgattataatgttataaaagaAAGAACTGATGATAGCTTGGCTGCATGTAGCACAGATCAAATGGAGTCATTGAAAATAACCATTGATGTGGATGTTTCTAAACCAACAGAAACTATAAGTAGGCCCCATCCTGTTCCTGCACCACGGACCAAAAAGCCAACCTTGTCAAGCTTAAATACCGGCACTCCTAAAGTATCAAGTGCAAAACCTACTGAGGCCGAAAAGGAGACAGCACCATCTTCAGGCCTGGCTGAATCATCAAGAGAAGATGATAAACCACTAAGACCCAGCTCATTTCGCTTTAACATTGCGTCTGCAAAATATCGCTCCAAATCAAGTGATGAGATTGTGGCTAAGCAGGATGACGAAAGCTCTGGTAATACACAGAAGGGCCAAGCCTACAACCAGAACCCGGTAGTACAAATGGAAAAAGTGGAAAACTCAAAATCCACTGAGGTTTGCAGAAATACTCCAGATAAAAGAAGCAGTTTGAGGAGGGAAGCAATAGGCCAAAATGTCTCCAAGACAGGAGTAGGTGACAATCCTGAAAAGTCTGAAGCATGTTTACAAAGCACAGAATGCctaaaaagtgaaaaactgaAAGCTGAGGAGTCCGAGGACAGAAGAGGTCTTTTTGGGGTTAAGCTGCGAAGCACGTCTCTGTCTCTAAAGTATCGCTCTGAGCTGCCCAAATTAGAGGCTGAAATGAAGCGACATAGTCTGGAAGGCTATCATAATCTAGCAGTAAAGGAACCAGTTTCCAGTGACACGGAAGCAGTTGGTAATGACAGAAAAGCAAATGTTCTGACAAATCCTGCACCACGGAGCTTGGATTCACAACAGGATCCAATTTTAGACAAAGGCAGTGAAACAGACAGCAGACCTGAACCAGCACGGAGGAGTCTTCCCCGAGAAAAGACTAGAGTCCACCAGTCCTTCTCCACTAAACCATCTACTCAGCCAGCTCCACCACCTTCTTTATTTACGTCTCAATCCTCCTCCACTCAACAACTTTCAAAACCATCCCTGCAGCCTAGACCTCACTTACCACCAACCAGCAAACCCCAACCAGTTAACCAATCATCACAGCAAATTGCACCCAAAACAGCTCCAAGGGCAATGGAAAGATGGACCATGTCCaatcagagagaagaaaagagttCTGTGAGCCAGTCTACACACAGAGATGAATTATTGGATTCTAAGGGACAATCAAAACATGGAGTCAGAAGTAACACCCAAACAGAGCCTGATCAGCAGCCTCCATCAGACAAAGCTCAGCCGACTTGGATGGAACTTGCCAAGAGAAAGTCTCTCGCCTGGAGCGACAAGACCTTAGATTCTatgaatttttaattatgtaaatagGTTCAAAATGCACATGGACAATTGACAGAATACTTAGTTTTTGTAAATACAGACTGGTTAAATAAGCTAGATGCGCAGGATTACCGTGCCTTGTCAAATAGTGAAagctaaaatactgaaaatctAGTCAAaacagaattatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU441285 lncRNA downstream 128206 8428604 ~ 8444065 (-) True G372522
TU441222 lncRNA downstream 305082 8261435 ~ 8267189 (-) True LOC113537489
TU441219 lncRNA downstream 368047 8202768 ~ 8204224 (-) True G372471
TU441040 lncRNA downstream 487732 8082963 ~ 8084539 (-) False cars2
TU441021 lncRNA downstream 555883 8016105 ~ 8016388 (-) True G372307
TU441552 lncRNA upstream 184614 8775032 ~ 8788141 (-) True G372742
XR_003403741.2 lncRNA upstream 373167 8963585 ~ 8965621 (-) False LOC113537261
XR_003403742.2 lncRNA upstream 373167 8963585 ~ 8965428 (-) True LOC113537261
TU442113 lncRNA upstream 1169323 9759741 ~ 9759949 (-) True G373288
TU442117 lncRNA upstream 1173201 9763619 ~ 9764526 (-) True G373292
XM_034300034.1 mRNA downstream 3236 8556011 ~ 8569035 (-) False LOC113537579
XM_026932136.2 mRNA downstream 4795 8556011 ~ 8567476 (-) True LOC113537579
XM_026932280.2 mRNA downstream 17963 8529482 ~ 8554308 (-) False LOC113537664
XM_026932281.2 mRNA downstream 29184 8529482 ~ 8543087 (-) True LOC113537664
XM_034300276.1 mRNA downstream 139833 8429562 ~ 8432438 (-) True LOC113537606
XM_034300158.1 mRNA upstream 989 8591407 ~ 8610841 (-) False tsga10
XM_034300157.1 mRNA upstream 989 8591407 ~ 8606840 (-) False tsga10
XM_026932146.2 mRNA upstream 989 8591407 ~ 8606840 (-) False tsga10
XM_034300159.1 mRNA upstream 989 8591407 ~ 8606176 (-) False tsga10
XM_026931823.2 mRNA upstream 50094 8640512 ~ 8669319 (-) False col17a1a
TU441284 other downstream 139847 8429611 ~ 8432424 (-) False LOC113537606
TU441267 other downstream 243245 8320984 ~ 8329026 (-) False timmdc1
TU440974 other downstream 655950 7912466 ~ 7916321 (-) False fam155a
TU440780 other downstream 847476 7718263 ~ 7724795 (-) True G372086
TU440391 other downstream 1503740 7058835 ~ 7068531 (-) True LOC113537271
XR_004577317.1 other upstream 989 8591407 ~ 8606840 (-) True tsga10
TU442201 other upstream 1288425 9878843 ~ 9918740 (-) True LOC117596103
TU442843 other upstream 2280866 10871284 ~ 10872546 (-) False lipt1
trnar-ucu_14 other upstream 2882462 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 4718620 13309038 ~ 13315296 (-) False gyg2

Expression Profile