RNA id: XM_026932249.2


Basic Information

Item Value
RNA id XM_026932249.2
length 2549
RNA type mRNA
GC content 0.54
exon number 11
gene id taf5
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 8743452 ~ 8752250 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACGTATTCGACGTCGCCCGAACGTCCTTTCATTCGCCTGCGTCATCACGTCGATGTTGTGTTGCGCGTCGGGGCAAAATGGCGGCTGTGCATGATGGACCGAGCGACGTCGAGAGcgagaaagaaacaaaacccGACATTCTGAGCGAGGAGTCGGCAGCAAACCTGCCCGGAATAACGTTGTCCTCGTCGCCGCTCGCACCTCCTTCTGCCGTAGCGCCCAAAGCAGAGGAGCAGCAGAAGACTTTACTCGCCGTGCTGCAGTTCCTGAAGAGGAACAACCTAACGGAGTCGGTGGATATCCTGCGGCGCGAGGCAAGAATACAGGACGAGCTAGAGGAGGCGCGCGGGACAGACGCTGCAGCACCGGGGCTGAATTCCGGCTCCGGAGACAACAGCTCACTCCTCAGCCGTGTGTCTTCCCAAAGCGGCGCTCCGGCTAAAGGTGGAGAGGACCAGCCGGATGTCAGCGTTGTCCTCTCGGCGTACAGCCAGCAGGGGGATCCTTCATTGTATCAGGTTTACTACAGCGGGCTGAAGAAGTTCATCGAGTCGGTACTGGACTGCCACAGGGCCGAGCTGTCGCAGCTCTTCTACCCGCTCTTTGTTCACATGTACCTGGAGCTGGTTTACAACAACCATGAAAACGAAGCAAAGGCATTCTTTGAGAAGTTCAGCGGTGACCAGGAATGCTACTACCAGGACGACCTGCGTGTGCTCTCAGGCCTCACCAAGAAGGAGCACATGAAGGGTAACGAGACGCTGCTGGATTTCCGCACAAGTCGCTTCGTGCTGCGCATTTCGCGCGACTCCTACCAGCTGCTGAAGCGCCACCTTCAGGAGCGCCAGAACAACCAGATCTGGAACATCATCCAGGAGCACCTCTACATCGACATCTTCGATGGCATGCCACGGAGCAAGAGTCAGATCGACAGCACGTCCGGCAGCCTGGCTGGAGAGGCCCGCCGAGAGGCCAACAAAGCCAAGGTGTTCTACGGATTGCTGAAGGAGCCCGAGATCGAGGTCCCTCTCGacgatgaagatgaagaggCTGAGAATGAAGAGGGCAAACCCAAGAAGAAGAAACCTAAGAAGGACAGCATGGGTTCAAAAAGCAAGAAGCAGGACCCCAATGCACCGCAACAAAACAGGATTCCTCTACCAGAACTAAAGGACTCTGATAAACTGGACAAAATCATGTATATGAAAGAGGCCACGAAGAGGCTTCGTCTAGGCCCAGAAATACTGCCCTCGATATGCTTCTACACGTTCCTCAACGCTTACCAGGGTCTGACAGCAGTGGACATTACAGACGACTCAAGTCTGATAGCAGGAGGCTTCGCCGACTCCACAGTGCGTGTCTGGAGCGTCACACCCAAGAAACTCCGCAAGGTCAAATCCGCAGCAGatcTCAGTCTCATAGACAAGGAGTCAGATGATGTGCTGGAAAGGATCATGGACGAGAAAACAGCCAGCGAGTCCAAGATCCTGTACGGCCACAGCGGGCCAGTGTACGCCGTCAGCTTCAGTCCAGACAGGAATTATCTGTTGTCGAGTTCAGAAGATGGCACCATCAGGCTGTGGAGCTTGCAGACATTTACCTGTCTGGTAGCGTATAAGGGACACAATTACCCAGTGTGGGACACTCAGTTCTCTGCACATGGATACTATTTTGTGTCTGGAGGACATGACAGAGTGGCACGGCTGTGGGCCACTGACCACCACCAGCCGCTGCGCATATTCGCCGGACATCTCTCTGACGTCACCTGCACCTGCTTCCACCCGAACTCCAACTACATGGCCACAGGCTCAGCCGATCGCACCGTGCGCCTCTGGGACGTCCTGAACGGCAACTGCGTCCGCATTTTTACAGGACACAAGGGACCAATCCACTCTTTGGCATTCTCGCCCAACGGCAAGTACCTGGCGTCTGGCTCAACCGATGGCAGAGTTCTGCTGTGGGACATCGGCCACGGACTCATGATTGGCGAACTGAAGGGTCACAGCGACACCATCTATGCACTCAAGTTcagcagagatggagagatccTCGCTTCAGGCTCCATGGACAACACGGTCCGGCTGTGGGACGCCATCAAAGCCGTCGACGACGTGGAAACGGACGATTTCACAGCAGCCACGGGTCACATTCACTTACCCGACAACTCTCAGGAGTTATTACTGGGGACGTACCTGACCAAATCCACCGCCGTCATCCACGTCCACTTCACCAGACGCAACCTGCTACTGGCCGCCGGTGCATACATCTCCCAGTGATCACAGCACAGCTTCCATCACCAAATCATGCAGCACTGGCCCAGGAACAGCTCAAACAATCCGTGTTGCTCACCTCGTTTTTTAATAGGGTATTAAAGTGAAGCAACTGAAACTTATGGACTTAACCATGTGTGTATTTCCATCAGTTCTACACAGACACTGATACTAAACGTTGATTACTTTACACATCACTGCCATACAGGGTTGTGGCCCCAGCCTCCTGAACTGTACAGTCTTTTataattgtgtaaataaaacagCTTTTCTATGTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU441285 lncRNA downstream 299387 8428604 ~ 8444065 (-) True G372522
TU441222 lncRNA downstream 476263 8261435 ~ 8267189 (-) True LOC113537489
TU441219 lncRNA downstream 539228 8202768 ~ 8204224 (-) True G372471
TU441040 lncRNA downstream 658913 8082963 ~ 8084539 (-) False cars2
TU441021 lncRNA downstream 727064 8016105 ~ 8016388 (-) True G372307
TU441552 lncRNA upstream 22782 8775032 ~ 8788141 (-) True G372742
XR_003403741.2 lncRNA upstream 211335 8963585 ~ 8965621 (-) False LOC113537261
XR_003403742.2 lncRNA upstream 211335 8963585 ~ 8965428 (-) True LOC113537261
TU442113 lncRNA upstream 1007491 9759741 ~ 9759949 (-) True G373288
TU442117 lncRNA upstream 1011369 9763619 ~ 9764526 (-) True G373292
XM_034300038.1 mRNA downstream 3035 8710383 ~ 8740417 (-) True pdcd11
XM_034300039.1 mRNA downstream 3063 8710383 ~ 8740389 (-) False pdcd11
XM_026932404.2 mRNA downstream 46139 8694537 ~ 8697313 (-) True LOC113537765
XM_026931823.2 mRNA downstream 74133 8640512 ~ 8669319 (-) False col17a1a
XM_026931824.2 mRNA downstream 74133 8640512 ~ 8669319 (-) False col17a1a
XM_026932095.2 mRNA upstream 44117 8796367 ~ 8798248 (-) True msx1b
XM_034299956.1 mRNA upstream 83237 8835487 ~ 8848164 (-) True caly
XM_026932385.2 mRNA upstream 554483 9306733 ~ 9547257 (-) True sorcs3
XM_026932386.2 mRNA upstream 554483 9306733 ~ 9388736 (-) False sorcs3
XM_026932141.2 mRNA upstream 844764 9597014 ~ 9705826 (-) True cfap58
XR_004577317.1 other downstream 136612 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 311028 8429611 ~ 8432424 (-) False LOC113537606
TU441267 other downstream 414426 8320984 ~ 8329026 (-) False timmdc1
TU440974 other downstream 827131 7912466 ~ 7916321 (-) False fam155a
TU440780 other downstream 1018657 7718263 ~ 7724795 (-) True G372086
TU442201 other upstream 1126593 9878843 ~ 9918740 (-) True LOC117596103
TU442843 other upstream 2119034 10871284 ~ 10872546 (-) False lipt1
trnar-ucu_14 other upstream 2720630 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 4556788 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 4571832 13324082 ~ 13324173 (-) True trnar-ucu_15

Expression Profile