RNA id: XM_026932280.2


Basic Information

Item Value
RNA id XM_026932280.2
length 5893
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC113537664
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 8529482 ~ 8554308 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agtgcactacatgtagCACGGAGAGCTGTTTGGGATGTGGCTTGTTGTCGAGTGCCAGGTTCAGAGCGCGGCAGGTGGCTGGCTAGATGCTGGCAGTGTGCAGTGAGGAGAGGAGGGGCTGGACTGGGCTGGACTGGGCAGGACTGGGCTCATCCGGCTAGCTTTAGCTTGTTCGGAGATGCACCGTGCCAGCGgttcacatgaccataacagtCTGAGGGGTGAGTAACAGTTGGTCCAGAGGTCAGAAGAGGTCACAGGCAGCACGGCGCTGAATGTCCGTGACAGCTTCATGGGCCTGAAGGACCATCTGGATGATGGAGCAGGCCACATCCTCGACCTGGGGCTGGATCTGGACTACCTCCATGTGAAGGCTGTAGACCGGCAGGCCGGTGCAGATGCCCTTTCCAGAATGGACAGGGGCTCATTGGACACCAGCGAGGAAGGAGCGCCCAGCTCTGGGAGATGTCCTTCTTCGTCCCGGGGTGACTCAGAGGACAGCTGTGGATCTGATGGCGAGGTGGAGCGGGGCTGTACACTTGCCCCAAGCGATGGATCAGCTCGAGCTGTGCATCCGCCTCTTTGCCGCTCTCCATGTCTGGATCTGGATTCCCCAGTGCTGCCAGAAGTGACGCAGGATAATCCAAACACTGAAAATTCTCTAAGGGAGTACCAGACCAAGTTGGAGTTCGCTCTGAAGCTGGGTTATGCTGAGGACTTGGTCCGATTGGTATTAAGCAAGCTCGGGTCAGATGCACTGATCAACGACATCCTAGGGGAGCTGGTGAAACTTGGCAGCAAGTCAGACAGTGACAGTGGTGCGGCGACTTCATCCACTTCCACTTCTTCATCTTTAGCGTCTTCCGGGTCATCGTCTTCTtcagcatgtagcttctcagagTCTACCGATTCGCGACGCTCTGAGTCGCCATCACAGTCAATCCTGGATGACAAGGATAACCTACGCCCCATTGTTGTGGATGGAAGCAATGTAGCCATGAGCCATGGCAACAAGGAGGTGTTTTCTTGCCAAGGTATTCAGCTTGCAGTGGACTGGTTCCTTGAACGGGGCCACAAAGACATCACAGTGTTCGTACCAGCATGGAGGAAAGAGCAGTCCCGACCTGACGCTCTCATCACAGaTCAAGAGATCCTGAGGCGACTGGAGAAGGACAAGATCCTGGTTTTCACACCCTCTCGCCGGGTCCAGGGGCGTAGGGTGGTGTGCTATGATGACCGGTTCATCGTCAAATTGGCTTACGAATCCGATGGCATCATTGTCTCCAATGACAACTACAGGGATTTGGCCGTGGAAAAGCCAGAATGGAAGAAGTTTATTGACGAGCGACTTCTCATGTACTCGTTTGTCAATGATAAGTTCATGCCTCCTGATGATCCCCTTGGTCGCCATGGCCCCAGCCTTGAGAACTTCCTGAGAAAAAGGCCCATCGTCCCAGAACACAAAAAACAGCCTTGTCCATATGGAAAGAAATGCACTTATGGTCACAAGTGCAAGTTCTACCACCCAGAGCGTGGCACCCAGCCGCAGCGTGCCGTAGCTGACGAGCTCCGTGCTAGTGCCAAGACCTCTGCAGCCAAAGGCACGAATGACTCCGGTCTTGTGAAAAGCCACAGTGTTCCAGGAGGCTCACGCAATGATAAAACCGGTGATGGAAAGCGTTCACACTCAAAGCGGCAGTCAGACCCCAGTGTCCGCACCCTTTCGTACGGTGACGTGGAGGACAAGCTGAGCTCCAAAACCAAAGCAGACCCCCAGAACAGCAGCTTGGCGCTACCCCCAGCACCAGGTGGGCCCCCTTCCTGCCACACTCATACACAAGACCAGAGAGAACAACTGACATGCTTTTCCAAAAGTCATACAGTGCCAGCTTTCCCTCAAACAGACTCCTACCCCACCTCTGAGTCTCCAGATCTCAGCTACTACTCCCTTGTCCGTGGCTACTCTGGCCTCAGCTTGTCCACCCAAAGGAGCCCAGAGCGGCCTTTCCTGTCTGACATGGATGCACGGCTCAGTTCCGTGGCATCTGACTGCAGCAGCGAGGGCAGCGCCAGCTCTGATTCGTATGGCACGGTGCCTCCTGGTGAGCGCTCCTGCATGAGCTCGCCTGACTCACTGCTGGACGATGGGCTCAAGTGTCATCAttaccaccacctccaccaccaccgcAGGCAGTACCCGCTGCCCATGGGCCTGAATCCAccaccccaccaccaccaccagagCCGTGTGCTTTCCCCAGTCCCTTCGCCTCACCCAGGGTACCATCACGGGATGGCCCGCGGACACAGCTTCACGCAAGATGACCAGCCTCCGGAGCCCCACTTCAAGCACTCAGTGTCCTACATTGGCCCACAAGTCCAGCACCAGATGATTGGCGCCAGATCCAGTTGTCCTGGAGAATATGCTCCTCAGAGTTCCCCACTGAGTCGAGGCCTGGCATCTACACGTCTTGACAGCGTGTCTGACTCCAGGCTCTATGAGCGCTCACCACTTTTGACCAGAAAGCCCTTCCCAGACCAGGAGAGGATGGCCAGCTGGGAGCCATACTATCAGCAGCCCTGCTACGAGCCCTTCACTTTCCAGAGCCTTCCAGAAAACAGGCAGCAGGCATGGCGGGTGCCTTGGGGACAAACTCCTCTTCATCCTTCTCCTCCTCATCCATCCCATACTCCCCACCAGCACCAGGAACCGCCTGCCCTTGGTCGCTATCAGGAATTGCGTGAGAAAGTGTTCATCAACCTGTGCAACATCTTCCCCACTGAGCTTGTGCGCCTGGTCATGGGCCGGTACCCTCATGTTACCGATGCCCAACAGCTGGCAGCCGCTATCTTGGCTGAAAAGAGCCAGACTGGTTACTGACAACCCATGCAAATGATTGGAACTGTAGCAAATATATTGAGTTCAATTAACTTGTGTGTTTCCTGAGGATTACAGGGGTGTCTGCTAGGGATAGTCCAGGCCTTGATAGGTTATACTGTGCTTCCGTTTGGAGGTTTTACAAGGTTTTAATGGAAACCTGTAAAAATGATCGTAGTGAGGACGTAGTGAGTCATGTCATACCTGGATTTCTTATTTGACTCAGTTTGAAGTctgtcaagttttttttttttcttcagcagtgGAGCCATAACTGCTAGTAGCAATTTGTCTACCTGAAGTGTGAATGTGGAAATGAGtgtgacattatttattttagtctATATATTTCCAGCAAGGTTTTGCTTTATGTTGATAGTTTGGTTCAGGTGAGCATGTACTAATTCACAAGGCACTTTTTCATTGCTGTTTATCAAATGTAACGTTTGATAACTTATGTCAATCAAACAAGAACTGATGGAAGGCCAGATGATTTGTAGGAGTGAACAGCGTACTGCGATCAAGTTGTTGTCACTGATGCAGAAATTGGGctcacatgtaaaaataagaaatgaccAAATAAAGAGCAAACAAAGGGCAGGACCCTGTCTGCTTTTTCTTGTGACAAGGAAAAACAGTTTGCTccctcagcaaaaaaaaaaaggtgtataaATTTACTACAAATTTTATTAAGTCAGTTTAAAATACATTCCCACAATATCTGGCCTTTCATAATCCTTGTGATATAATGCCTACTCTCACTtgaaattttgtgttttgtttttatttagtgtcTCAAAATTGCTTTCCCCATAACCAATTTTTGAATCATGAATCATTGGGTCTTTGGGGAAATGCACCAAAAGCTGGCCCAGTGAAGTACTCACTGAGTATTATTTTAGTAGTATAGTTGTGttaaattattatcatttatttcttaCAGGTATCTTTTAagctttgtcattttgttttgttgtgttacagAGAGACGTTTATTCAtggatgtgtggatgtgtgatCATGTGCTTGTCTGTATGTCTGGGAACTTGGGTGGAAATTCTCATCAACTATCTTGCATCATAAAGCCAGTGTTATTAGATACAGTGGCAGAGTTTCCCAAAAAGGATGTGGTTTTTAGAAATGAAGAGTTTAACTTTCACTCAGCACTTTTTGGGAAACTTTTGCCGTGGTCCATAACCACAGGTGTAGTGTAGGGGAGACAGACACCACCAGTCTGTCTTTGTACCTTAGTTTTAGTAAGGGACGTCTCTGGCTTCATGTATTGGGTGCATGCTACTGTCATTCGTCATCTTCATCCTGGTGCTGTATAAGCAGTTATGAGGGAAAACCTGATTGGGTGAGAAGCTTTTGTGAGTCGCATGTTCGGGAACTTCCAACGAGACGTTTGTATTTGTTACTGACGTGACCTGTGGTAGCCAGAGAATACCTGTCCTCGTTGATACAAattgtatcttttttttaacttaaaaaaccagagacatttatatacatattaatcTATGGATAAAATATATTCACACAGTTATGTACAATATGTAGTACTTGTGtaatttaagatatttttggCAACATTTTATCATTACTTCAAGGAAAACGGTTGAAgcgtttctttcctttttttttgtgggcTAAAAAGAGCATCAAATGCATCTTTTAAAAAGGATGGAGGGTATTACCGTGATGGAGCTATATGctaactattttatttatttattttctttggaaGCAGAGGGTTATTTATGGTCTATACCTAGAATTAAAAAGTGGGTTTTTGGGTATGAAGTTggtttttacaattttatgagGCAAAATGACtgattatatgtattattaggttttaatttgttttccgTTGATACGGTTCTCAGTGGTTTTCCAAAAGCTTTATTAGTATAACGATTGTATTTACATGGTAAAATGAGCAGATGACTGCTGAACCATATGATTGGTTATTATGCTATGATGCTTCTGGAAGACTTGTAAACTAAAACTTCACATTTTCTGGATTTGCCTGTGGAAAACAAATGATCACACAGACCTTGTGTTTTACCTGAAAATATCCGATGCATTTCAAGAGGGCTGGGCTCTTTGGGTGTAAAATGCTGCCTGAAATATTTGTTAGGAGCACCTTTGTTTTGAAAAAGAAGAGCCTTCCCTCGAGCCAGGTGGCACCATGTGCCATCGTTGGCAGTGGCGTGGGCATAGAGTAAATGCCTCTACACGGCATTGTGCTTAAGACACATCTGAATAATCTGAACCATGTTCAGCTTACGAGTTTTCAGGGCCGGCCTTACTGCAGGACGTCCTTAAtgtcattttgtgtatttgtagaATAATAACTACTGTCCTTACCTAAGCACGCTGTtaacagctttcacacaaatacacaggaGATTATGGACGTCTTCAGTAAAGTGGCACcacttttcatatatatatatatatataaaagttgtttttcatTGTGCTGTGCTGTATCAAAGCTTCAGTGGACTTGCTGTGAGTTAATGTTACTGTACTGATGTCACGCCTTCTCCTCCATCAAGTCTCTCTGCTTTTTCTAAACCGCCTCGTGGTGGAAATGTACATAGGCTAATTACAGAACCTGTTTCCGTGATGCGCATCCTGATCTGTGGAACGACGCACACAGGGAGACTGCTGAATCCATTTTCACGCAGATGTATTGGAAGGTTCAGTAATTACTCCTTGATTCATGAAATGTAGGCTTTACGCTCAAGGACCAAAGCGAACAGTGAATTAGTCAGCAGTAGGATTCAGAAGATAGTCCAATGATAGTGCATTTGTTGGGCAAAAGCAAGATAgtctttcagatttttttttaaaccagatgAAGTTATATCGTTGGAGAACGGGAAAAAAATAGTTTGGTATTTTTATGATGTCAGGAAAATATGTGGTCAGAACTTTGTTGTTGCTGCATATCCTGGAGTTTccaaatgtgtatttttattgaaataaaaataccaaGATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU441285 lncRNA downstream 85417 8428604 ~ 8444065 (-) True G372522
TU441222 lncRNA downstream 262293 8261435 ~ 8267189 (-) True LOC113537489
TU441219 lncRNA downstream 325258 8202768 ~ 8204224 (-) True G372471
TU441040 lncRNA downstream 444943 8082963 ~ 8084539 (-) False cars2
TU441021 lncRNA downstream 513094 8016105 ~ 8016388 (-) True G372307
TU441552 lncRNA upstream 220724 8775032 ~ 8788141 (-) True G372742
XR_003403741.2 lncRNA upstream 409277 8963585 ~ 8965621 (-) False LOC113537261
XR_003403742.2 lncRNA upstream 409277 8963585 ~ 8965428 (-) True LOC113537261
TU442113 lncRNA upstream 1205433 9759741 ~ 9759949 (-) True G373288
TU442117 lncRNA upstream 1209311 9763619 ~ 9764526 (-) True G373292
XM_034300276.1 mRNA downstream 97044 8429562 ~ 8432438 (-) True LOC113537606
XM_034300277.1 mRNA downstream 98537 8429562 ~ 8430945 (-) False LOC113537606
XM_026932384.2 mRNA downstream 113541 8355647 ~ 8415941 (-) True LOC113537751
XM_026932245.2 mRNA downstream 192614 8329650 ~ 8336868 (-) True poglut1
XM_026931720.2 mRNA downstream 200506 8320868 ~ 8328976 (-) True timmdc1
XM_034300034.1 mRNA upstream 1703 8556011 ~ 8569035 (-) False LOC113537579
XM_026932136.2 mRNA upstream 1703 8556011 ~ 8567476 (-) True LOC113537579
XM_026932228.2 mRNA upstream 17963 8572271 ~ 8590418 (-) False cracdlb
XM_026932229.2 mRNA upstream 17963 8572271 ~ 8579925 (-) True cracdlb
XM_034300158.1 mRNA upstream 37099 8591407 ~ 8610841 (-) False tsga10
TU441284 other downstream 97058 8429611 ~ 8432424 (-) False LOC113537606
TU441267 other downstream 200456 8320984 ~ 8329026 (-) False timmdc1
TU440974 other downstream 613161 7912466 ~ 7916321 (-) False fam155a
TU440780 other downstream 804687 7718263 ~ 7724795 (-) True G372086
TU440391 other downstream 1460951 7058835 ~ 7068531 (-) True LOC113537271
XR_004577317.1 other upstream 37099 8591407 ~ 8606840 (-) True tsga10
TU442201 other upstream 1324535 9878843 ~ 9918740 (-) True LOC117596103
TU442843 other upstream 2316976 10871284 ~ 10872546 (-) False lipt1
trnar-ucu_14 other upstream 2918572 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 4754730 13309038 ~ 13315296 (-) False gyg2

Expression Profile