RNA id: XM_026932381.2


Basic Information

Item Value
RNA id XM_026932381.2
length 4377
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC113537750
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6958020 ~ 7025006 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCTCTACGTCGCTCATTTGGTTCGAATCAGATGCACAGTTGCTGAGACTGCAGTGTGATAAGAAACTGGAGACGTGGACGAGCGTTGACGAGCTCGACGTTTTCACCAACTCAGCTCACTTCCCAAGACCCACTGCGGCTGTTGCGCCGCTCGGTGCACGTTTCCCCAGTACCCTTCCTCCCCTCCACACCATCCACAGAACAGCATCACCGATACAATTTGATGAAGAGCTCCAGAATGCCGGAGAGTGCACGCGCTGAGTGACcgccctccctctccctctcctctctctctctctctccatttatctctctctctctctgtctctctctccctccctcactcccaCTGGACGCTGCGATGAATCTGGATGGAGCGAGATTGCCACGACGGAGGCCCTAGATAAGTCGCTCCAGCCGAAAACTGGCCAAGGCATCGCGTCTGAGCAGATGTGAAAGCCACGTGTCTACGTAATGGGATTCCAGTCTCTCGTTTCGACCCGCACTCCCGCATCCTGTTCAGGCGCGCGGGTTCAGCACTGCGCGGGCACGTTCGCGCCGGACGCGCTCCACTTTCGGAAACGGGCTGCTGGGGCTCCGGAGGCAGTTTAATACAAGCAGAGGAAAACGCACAAACGGGCTGACTCTTATAAACACGGCAAAGATTGAAGTTTTAGAGGATTACTGGAATCCCGCAACTGCTGGAAATGTTTGACTGAAACAGGGGAACGGAAACACTGGCGATGTGCTTAGTTGGGGTTTACCGCTGCGGTCCTCTTCCACGAAGGCACGCGCCGTCGCCTGGCTTCTGACGCCGCGCAGAGCAGATCCCACCCTTACCACGGAGCGCCGAACTAATATGCAATGTTATTTTGTGCTGAAAGCCCTCGCGTCGCACCGTGATCAGGCCACACACCCACCCCCGCGCGACAAATGCGATCGAAAAAGTGTCTTCGGGTTAGGGACAAGCCGGGAAGGCTACGCCGCTGGTAACGAGTCGGATGCGAACCCAAGCGCCGTCCTAAACTGGCACGCAATATTTCTGCACTTGAGTGAAGACGCAGACGAGCCGGGGCATCACACGGCGTTTTCTATGGTACAAGTAGCATTCTCGTGCGGCAGAACTGATCCAGCAGGGCTATTATGCAACCGCAAAGAGCCCTTCCCTATGAGGGTGCCTAGGCTGCTGGACTGCTCTTCGCCCAAATCAATGTGGTTTCTTTggaacattttcagcaaagGATCGCATATGCTGCAGTGTCTTTGTGGCAAGAGTCTTAAGAAAAACAAGAACCCAAGTGATCCCCAGCTCAAGGGCATTGTGACCAGGTTATATTGCAGGCAAGGTTACTACTTGCAGATGAGCCCAGATGGATGTCTGGATGGGACCAAAGATGACAGCACTAACTCCTCAATGTTCAACCTCATCCCAGTGGGCCTTCGAATCGTTGCTATCCAGTCTGTGAAGACAGGACTATACATTGCTATGAATGCAGAGGGCCATCTGTACACATCGGAACTTTTCACACCAGAATGCAAGTTCAAAGAGTCGGTTTTTGAGAACTACTAcgtcatttattcatccatgcTCTATAGACAGCAGGAGTCAGGTCGGGCCTGGTTCCTGGGCCTAAATAAAGAGGGCCAGCCAATGAAGGGGAACCGGGTGAAAAAGACGAAACCAGCTGCACACTTTCTACCCAAGCCCATAGAagTCGCTATGTATCGTGAGCCCTCCTTGCACGATGTTGGTGAAGCAGTCCCAAAGGCTGGAGTTCCTCCCAGCAAAAGCACAGAGCCAGTGGTCATGAATGGTGGCAAGCCTGTCAGCAAGCCTGACAAGGAGACATAGCCCTATTCCCCTTCCCCTCCCCTTTGGAGGGACTCTCCACATGTGAtactttttagaaataaaatcacacatttgTGTCTTTGGCttgtgaaaggaaaaaagaagaaaaatctccCTCCTGTAGTGTTTATCCACTGGAACAAATGAATCAAGGGGTGGTTGTGGTCAAAGGACAAGGGTGTATTGCTCAAAAAGACCGTGAGAGTGTAGAGGAGATGGCTGAGGAGGGAGAGGGGGGCCACTGAATGCTCAGCATTAAGAGACTGTCATTGGAATGTCCTATGCGATATGGAACATCTTTTCAAAAGTCCCTTTTCTTTCAGTCCTACCTTTATTCCTGTGACAATCCTCTGTGAAAATGCCATATTTTCATCTGCCTTGTCTGGTAGCTTTGCCTGCTGACAGCTACCCACAGTTTTTCAGTTGGACCTTTCATGTTATTGTGGTTTTGCAGAATACCACAGTGCACCAGCATTTGTCTTGACTGATTGCTGTACAGatacaaattaaatatgttattgttgctgtttttttttttgttggtttttttttttcttgttggcccatttcttttgtttgttcttttctaTAATATTTTTCCATGTAGACTGTCAGGATTGGTGCACATAAATGAAATGGGGACATTGAATGATTGACATGAAAAATTGCTATGTCATGTAATGTAGATGTGTTTAAGATACAGTAAAAGTAGAGACAGTATGAAGCTGCCAAATTAGTTAAAGAGTGGTGCTTGGGTTAATTTCTTCCTTTTAGTTATTATCGCTCATAAGAATGACTGACAGAATGGCACTGAATTGCACTAGGTTTTAATCTGTGAACAGTTAAGAGATATGACATTGATAATCATGCCTCCAGGCATTCAGGGTGGACATAATTCCTCACAGGGGAAGAGTATACATATCACAAATACCCTCAATATGCCTCAGCTCACTTACCTGACTCTCAGataacagctttttaaaaaggaaTTTTGTCGTCTGAAGTCAACATAGTTATCGGCCTCTATGTTTTTTCTAATCTGACTGTAGTACAACCAAGCCCTGAAGCCCATGACCAATGACAGCAACTGTTCATGAGTGATGATGTGAATGATGATGGCTGAGTGTATGTTGATGCTGTCACACAGGTCAtggctgcatttttaaaaaatggtcagATGTATTGTTATTCCCTTTGCCATTTATAGTAGCAAACTTGAATATGAGATCTTAAAAAGTGGTATGCTGTTGGTATGTAGGTGGAAACGAAATGCTGTGTTTATCATGCTATTTTTATGTTAGGATTAAAATCATGCCTGAATACACAATGTTTTCCATTCGCAATTAATTTATCATGCCACTCATGAAAGGAGGTGATCACGTACTATAATGGAAAAGTACCATCTTTCActgagtgtttgtgttattttgtttagattttcCACTGATGAGGTTTCTTTTATGGAGTTTAATACAAAAGGATATGGAAATATCACTGTGCATCAGTAAATGCTGTTCATAAAACTTAGACATATAGAGGATATTGAacattattcataattaattaaaataaataaactgcaaatATGTTGTAGTCTGCCATAAatgaaagggttttttttattcaaaagcaaatatagtattatatatatatatatatatatatatatatataatattcaatTGTATTGCATCttcattatatacattttttggCAAGACAATTGCAAAATGCCTTcccactgtttttatttatttggtttatgataattgttatatatgtatatatttatggatGCTGCCATGCTAATGTTAAATGATTTCCAACAAGACTGCTATTTCTAatttctaaacacaaacaacagcCAACCATATGTTACTTTTGCATTAGTTTATTAACTGTTTTATTAATGCAATCTCTTAGATTGttcaaaacagtaaaatattttctcagtGTCACCtagaaaaaagactgaaaattgCACTATTTCAGTCCAACTTTTGGTTTTCATTTGAAAGTCCTTTACCTGTAGGCTTctaagatgtgttttttttccttctgggcAACCAAACTGTATATTTTGCCCTGCTGACCAGTTTTAACTGGTTTCATAGAAGActggatttatttttgtaaaattacaaGATGTGCAATCTTTGTTTTTCACTATCTCCCTGTGATGTATCTTCCCCATTTCActcacattttttccatttgtacTTGTATGTTCCCATGTTGCCATGgacattcattttctttgtttgtccttTGTATGTGTTGAGAATATTAACGGCTGGACGATATCCCCCGATCCCTTTCCTTTTCTGAGGTTTTCTTCCTTGATTCACCATATGTTTCACCTGTTGCATGGTAATAAAGGGGGAAGACTGAAGACCTGCATGTTGTAGGCTATGTGTATCAAGACAGTGATTAAAACGTTGTTGTACCACTAaactttacatacagtacatatatgcAAAAAAGAGTCTGCAGTGTACAGTTTGTCAATCCATTGTATACACAGA

Function

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU440274 lncRNA downstream 56677 6891766 ~ 6901343 (-) True G371634
TU440265 lncRNA downstream 76240 6879870 ~ 6881780 (-) True G371625
TU440266 lncRNA downstream 83600 6870572 ~ 6874420 (-) True pspc1
TU440272 lncRNA downstream 90060 6867744 ~ 6867960 (-) True G371632
TU440232 lncRNA downstream 142949 6808493 ~ 6815071 (-) True G371595
TU440449 lncRNA upstream 126432 7151438 ~ 7153159 (-) True G371787
TU440456 lncRNA upstream 158170 7183176 ~ 7183386 (-) True G371793
TU440604 lncRNA upstream 332305 7357311 ~ 7378538 (-) False LOC113537388
TU440608 lncRNA upstream 385975 7410981 ~ 7415018 (-) True G371929
TU440643 lncRNA upstream 442783 7467789 ~ 7468460 (-) True G371964
XM_026932255.2 mRNA downstream 47474 6870566 ~ 6910546 (-) False pspc1
XM_026932254.2 mRNA downstream 47610 6884037 ~ 6910410 (-) False pspc1
XM_026932365.2 mRNA downstream 95917 6835427 ~ 6862103 (-) True arhgap20
XM_034300425.1 mRNA downstream 161881 6791160 ~ 6796139 (-) True mxh
XM_034299998.1 mRNA downstream 178730 6772355 ~ 6779290 (-) True LOC117595692
XM_034299966.1 mRNA upstream 33829 7058835 ~ 7068469 (-) False LOC113537271
XM_034299965.1 mRNA upstream 33829 7058835 ~ 7068466 (-) False LOC113537271
XM_026932089.2 mRNA upstream 44172 7069178 ~ 7082854 (-) False si:ch211-91p5.3
XM_026932088.2 mRNA upstream 44172 7069178 ~ 7082854 (-) False si:ch211-91p5.3
XM_026932087.2 mRNA upstream 44172 7069178 ~ 7082854 (-) True si:ch211-91p5.3
XR_004577329.1 other downstream 594817 6358639 ~ 6363203 (-) False LOC113537742
XR_004577328.1 other downstream 924627 6019687 ~ 6033393 (-) False tpp2
XR_003403780.2 other downstream 1005707 5942429 ~ 5952313 (-) False LOC113537623
XR_004577339.1 other downstream 1410988 5534472 ~ 5547032 (-) False LOC113537235
XR_004577289.1 other upstream 33829 7058835 ~ 7068467 (-) False LOC113537271
TU440391 other upstream 33829 7058835 ~ 7068531 (-) True LOC113537271
TU440780 other upstream 693257 7718263 ~ 7724795 (-) True G372086
TU440974 other upstream 887460 7912466 ~ 7916321 (-) False fam155a
TU441267 other upstream 1295978 8320984 ~ 8329026 (-) False timmdc1

Expression Profile