RNA id: XM_026932384.2


Basic Information

Item Value
RNA id XM_026932384.2
length 2707
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC113537751
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 8355647 ~ 8415941 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACGGAGCACTGCCCCCGCTGTTATTCCTAACGTGGAGAGCCCATTCCGCCGCCGGGGCTTCCCAACCGGGCTCGATTTACTGCCCTACCTGGGGATTACTACACTCTAGTGTCGTCTGTACAGTATACGGCATAGACACGCGCACGTATCGGAATGCCACGCTTCGGTAAAGATTGATGTTTGATGGCTGGGAGCCTCCAGGCTCGTGTCCGAGATTGACACTCGACAGCGCACACTCTACACCAATCTCCTGAGTGAGTTCCACCTACTGCCAGATAAAAACGCCCACAAGCTCCTGCTACACCTGCCCACCGCCAAGCCGAGCAACATACAAAACGCCCTCAGCCAATCGCTGGGGCTGGAACACGTTACCATGGACACCGAGTCCACCTACTCCGGCTACTCGTACCACTCAGGCCGGTCGAGAGGATCCCACAGACATGGggaGCGCAGCAGAGAGCGACACAAGTCTCGCAGTAAAGACAGCAGTCGCTCGGAGAAGTCTGTCACCATCAATGCTCCTCCTGCAGAGCCCCTGTTGGGAGACCAGTCCATGCGAGGAGATGAAACACAGGATGACAACTGGGGTGAAACTACCACTGCGATCACAGGCACATCAGAGCACTCGCTCTCACAGGAGGACATTGTGCGCATTAGCAAAGACCTGGACGACAGCGTGGGTCTGGACTGTAAACGGTATTTAGCCGTCTCATTCTCTATTATCTTGAGTCTGCTGGTGCTCCTGACGCCACTCGCATTCCTCATCCTGCCGCGACTGCTCTGGCCCGAGAGGCTGCGTCCATGCGGCACGGCCTGTGAGGGCCTCTTCATCTCCGTAGCATTCAAGCTGCTTATTTTGTTGCTAGCCATGTGGGCGCTGTTTTTCCGGCCATCCAAGGCCACCATGCCACGCATCTTCATTTTCCGAGCCCTGCTGGCCATGCTGGCGTTCCTGCTCGTGCTCTCCTACTGGCTGTTCTATGGAGTGCGCATCTTGGACACACAGGATGAGGATTATCAGGGAATTGTGCAGTATGCCGTGTCCCTGGTGGACGCACTGCTCTTCATCCACTATTTGGCTATAGTGCTGCTGGAGCTGAGGCATCTGCAGTCCTGCTTTTCGCTCTGTGTCACACGCTCTACAGATGGAGAGACACGACATTACAACCTGGGACAGCTCAGCATCCAGAGAGCAGCTGTGGCAATTTTGGAGAACTACTACAGAGATTTCCCTGTACATAACCCAGCACTGCTCACAGCTTCCAAATCGCGTGCTGCCAAACACCTGGCTGGCCTCAAGGTCTACAATGTGGACGGTCCAGGAGGCAATAACGCTGCTGCAGCAGGAATCTCTCAGTCCCAGTCTCGCGCCATGATTGCTGCCGCCGCCCGCAGACGAGATTCCAGCCACAACGAGCTGTACTACGAGGAGGCTGAACATGAGAGACGTGTCCGTAAACGCAAGGCCAGACTGGTGGTGGCTGTGGAAGAGGCGTTCACACACATCCGGCGCGTACAGGAAGAGGAACAGAAGAAGTCTCCAGGAGACGTGATGGACCCGCGCGAGGCGGCACAGGCCATCTTCCCATCAATGGCACGAGCGCTGCAGAAATACCTGCGCACAACACGGCAGCAGCACTGCCACAGCATGGAGAGCATCCAGCAGCACCTGGCCTTCTGTATCACACACAACATGACACCAAAGGCATTTTTGGAGAGCTACCTGACCCCAGGCCCGACGCTGCAGTACGGCCGCGAGCGCTGGTTCGGCCGCCAGTGGACACTCATCAGCGAGGCGTCAGTGAACAGCGGCCTCAAAGATGGCACTGTCTTCCTGCTCAAGTGTGTAGACTTTAGCCTGGTGGTCACCACGAAAAAGATCCCCTATATCAGGCTGTCTGAGGAGTTCATCGACCCCAAATCACACAAGTTCGTCCTGCGGCTACAGTCGGAGACTTCAGTGTAGGCCAGTAGCTTGTGGTATTGTCTCTATTTACGGTCATTCACAaccaaatttttttctttggcttaaaaaaaaaatctcagttatTTGGGGGTTTTGCAGTTTTATTATGttgtctttttatatatataatatatacatataaatctGTATACCacatatttgaatatatttccttttattttttctttgctttgttgGTTGGTTTTTGTTTAAACTGAACGGACACATTGATGTTGGGTTGTGCACAAAGACACAAATACGATGAGGGATAACATGACACAAGACTCAAcattctacttcttcttcttaaaaGAGACAAtctagaaaaaagaagaagaataaatacACTCGTAAGAGCCCAGTGGACCACTAATAACGGTGGACAGACCGATTATAAAGCAAGACACATCCATTCTGCTGTTATTCTGCAGCTCTGACGGACCAGCTGCTGGCATCAGAGAACTCCCAGAATGCTCCTCTTTCCACTGCAGAATTTGGAGGTTCAAGtggcaacctttttttttctactgtaaGTGCAAACTAACTCTTGGTGCTCTTTAAAACACATTTGGTTTGTATTTCTGCTGATGATACACAACATAATCATGTTTTCcaatctttctttttcacatatGCACAATGTACAGATGTGAGGTGTTGGTGTGTATCTATTGGAGTGTATTCAGACAAGTTCCGTGTTCAGCTGGTCACAAAATATGATTATAGGTCATTTGATGAAA

Function

GO: NA

KEGG:

id description
K04510 VANGL; vang-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU441222 lncRNA downstream 88458 8261435 ~ 8267189 (-) True LOC113537489
TU441219 lncRNA downstream 151423 8202768 ~ 8204224 (-) True G372471
TU441040 lncRNA downstream 271108 8082963 ~ 8084539 (-) False cars2
TU441021 lncRNA downstream 339259 8016105 ~ 8016388 (-) True G372307
TU441014 lncRNA downstream 366449 7988950 ~ 7989198 (-) True G372300
TU441285 lncRNA upstream 12663 8428604 ~ 8444065 (-) True G372522
TU441552 lncRNA upstream 359091 8775032 ~ 8788141 (-) True G372742
XR_003403741.2 lncRNA upstream 547644 8963585 ~ 8965621 (-) False LOC113537261
XR_003403742.2 lncRNA upstream 547644 8963585 ~ 8965428 (-) True LOC113537261
TU442113 lncRNA upstream 1343800 9759741 ~ 9759949 (-) True G373288
XM_026932245.2 mRNA downstream 18779 8329650 ~ 8336868 (-) True poglut1
XM_026931720.2 mRNA downstream 26671 8320868 ~ 8328976 (-) True timmdc1
XM_026931946.2 mRNA downstream 35804 8294879 ~ 8319843 (-) False gk
XM_026931947.2 mRNA downstream 35804 8294879 ~ 8319843 (-) False gk
XM_026931945.2 mRNA downstream 35804 8294879 ~ 8319843 (-) True gk
XM_034300276.1 mRNA upstream 13621 8429562 ~ 8432438 (-) True LOC113537606
XM_034300277.1 mRNA upstream 13621 8429562 ~ 8430945 (-) False LOC113537606
XM_026932280.2 mRNA upstream 113541 8529482 ~ 8554308 (-) False LOC113537664
XM_026932281.2 mRNA upstream 113541 8529482 ~ 8543087 (-) True LOC113537664
XM_034300034.1 mRNA upstream 140070 8556011 ~ 8569035 (-) False LOC113537579
TU441267 other downstream 26621 8320984 ~ 8329026 (-) False timmdc1
TU440974 other downstream 439326 7912466 ~ 7916321 (-) False fam155a
TU440780 other downstream 630852 7718263 ~ 7724795 (-) True G372086
TU440391 other downstream 1287116 7058835 ~ 7068531 (-) True LOC113537271
XR_004577289.1 other downstream 1287180 7058835 ~ 7068467 (-) False LOC113537271
TU441284 other upstream 13670 8429611 ~ 8432424 (-) False LOC113537606
XR_004577317.1 other upstream 175466 8591407 ~ 8606840 (-) True tsga10
TU442201 other upstream 1462902 9878843 ~ 9918740 (-) True LOC117596103
TU442843 other upstream 2455343 10871284 ~ 10872546 (-) False lipt1
trnar-ucu_14 other upstream 3056939 11472880 ~ 11472971 (-) True trnar-ucu_14

Expression Profile