RNA id: XM_034299922.1


Basic Information

Item Value
RNA id XM_034299922.1
length 3216
RNA type mRNA
GC content 0.51
exon number 22
gene id chtf18
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 544258 ~ 558212 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAAGGTTTCCAGAATGACCCGGATGTGTATACAAAGCCCAAATATTTTGCGCGAAAACCGGAGCCGGGAAGAAttcctgtatttttattttatttttttataataaacagtTGACTAAATTGAGTTATTTTTCCTCCAGCTCAGCAtggatgaatatgatgaaatgtACGGGATTGAGGATGATTTTGAACAACAGTTTGCAGACGAACTGGAGGTGATGGCAGAAATGGAGCGCGAGTCTCCTCGTAACGTGAAGGTGTCGGAGCTCAGAAGCAAGAAGCAGACGTTTGAGGAAGCTCTCACATCCGCCGACTCGGCTTTACCCGACGCTCCGGAGCGCGAGGAGGACGAGTCGCTGAGTGAGTCGCTGAcGCCTAAAGCGAAGAAACGGAAACAGGACGTCGTCAAAAAGCTCCATTTCGAAGCGGCAcatgaggaagatgatgatgaagatgatggtaatgatgacATCACTCCTCAGAGGTCAGAGAAGACGAGgtcggggttttctctctctctctcccccgaCAGATCCTTAGCCGCCGGTCCGCTCAGTGTGTTGGACATCAGCGGTCTGGAAGTGCTGCAGGAATCTCCGAAGAGAGCCGCGGCGCCGCGCCACGCGCTGAAACGTCCTCCAGCGAGCGGAGACTTCATCACCGTCACCGACTGCACGGGCAACCGAGTGTATCTGCGCAAGACCCAGGACCAGGACCAGCAGACGCCGGATCCGAGATTTTTCCGaaattcccagaatgcactgggGCTGCTGGCTGTTCCTGTCGAGGTTCTCAAAGAGCAAGTGTCAGAAAGACGTCATCGTCAGCTGGTGGAGGAATCACAGAGATTAACAGAACTCCtcaacagtggtatAGATCCTGAACTTCTTGTGGATGAAGTGCCAGAGGACACTGAAGATGAAAACGCTAACGCGTCTGATGAAAGCTCCGCCTCTCGGCTGTGGGTGGATCGCTTCGCTCCTCAGCATTATATGGAGCTCCTGAGTGatgatttcacTAATCGCTGTTTGTTGAAATGGCTGAAACTTTGGGACTCGGTGGTttttgggagagagagaaagccgCGCCCGCCCACAGCCGAGTCCAGAGCGAACAGCACCAGCGctcagaaccagaaccagaaccagaaccagcgctttaaaacaaaaagccaGATCACTGAGGAGATCCTGGAGGCGGAGCTGGACCAGTACAAACGACCCAAACTCAAGgtTGCGCTCCTGTCTGGACCTCCTGGATTAGGAAAGACGACATTAGCGCACATCATTGCTAAACATGCGGGATATAATGTGGTCGAGATCAATGCcagtgaTGATCGCAGTGCAGAGCTGTTTCAGAAGCGTATCGACACGGCCACACAGATGAAGTCGGTCCTGGGAGCCAACGAGAAACCAAACTGCCTCATCATCGACGAAATAGATGGAGCTCCAGCAGCTGCCATCAGCGTGCTGTTAGCGACCGTGAACAGGAAGGATAGTCGAGAAGGAGAAGACTCCACCTCAAACCCcttgaagaaaaagaagaagaaagagtcTGTTTTGCTTCGGCCCATCATCTGCATCTGTAATGACCTTTACACTCCAGCTCTGAGGCCGCTGAGGCAGCAAGCGTTTTTGTTGACGTTTCCTCCGACGCAGCAGTCTCGCCTCACACAGAGACTGGCAGAGatcacACGTCGACAGGGTATGAAGGCAGACACGGGCTCTCTGATGGCCTTGTGTGAGAAGACGGACAACGACATCCGTGCGTGCATCAACAcgctacagtttttacaCGGCCGCGGTCAGAGACAGTTGGATCAGCGTGTGGTGAATTCAATGAGCATCGGCTTAAAGGACCAGAACAAGGGACTGTTTTCAGTGTGGCAGGAAATATTTCAGCTTCCTCGACTgaaaagGAAACGGATTGGTGGAGATCCGTTCGGAGGTTTtgaggaggcggggcttaaAGACCGCAGCCAGAGACTTCAGCACATCCTTCACCTGGCCTCGTCCAGCGGAGAGCACGAGAAACTCACTCAGGGTTTGTATGATAATTTCCTCAGTATGAAGCTGAAGGATCCGAGTCTGacgggtgtgtgttcaggaatGGACTGGCTCTGTTTCTCTGATCTggtgaacgagtgtgtgttacacgGGCAGAATTACTCGCTCATGCGCTACCTGCCCTTCCTCCCTGCTGCGTTCCATCACCTGTTCGCTGCTAACTCCGTCCCGCGCATCAGTTACCCCAACAGCCACTACGAGAGTCTTACGAAGACCCAGCACACTAAGAACGCCCTGGTTGCCATGTTGGCCGAGATCCCTCCTTCCATACGGAGCCGTGTCTGCCAGAATAACCTGTGTTTAGATGTTCTGAGTCTTTTACTGGAGCTCATCTGCCCCAAACTACGGCCGgttaaTCCTCAGCTGTACAGTACGAGGGAGAAGCAGCAGCTCTGTGAGCTCATCGATACGATGATTAACTACAACCTGACCTACAGACAGGAACGCACAGCCGAGGGGCAGTACACCTACATCCTGGAACcgaacatAGAGGACGTGGTGCGGTTTCCTGGTCTGCCCCCCCGGAGACAGCTGACCTATCAGGTGAAGCAGCTGATCGCCAGGGAGACGGATCtggagaggatgaggagggtGGAGCGGGCGCAGCAGAGACACAACCCTCAGAAGATGGAGAAGGTTGAGGAAGTGAAGGAGGTAAAGAAACCTCAGGCCAAGAAGCAGGTGAGCAGGAACCATCAGCAGAGGCTGGAGAACATCGTCAAGGAGGCGGTGGTGGAGAGTAAGcctgAAATGGATTTCTTTGGACGAGCCGTTGTTCCTAAAGAGAAACCGGCTGCTAACTCAGAAACAGACGAAGACGGAAAATCGAGCGGCAGCTTGCAGATCGGTAAAGCTGTAGGGAACAGTGACGTCTGGTTCCGGTTTAACGAAGGAGTTTCGAATGCAGTGCGCAGAAATGTCTACATTAGAGAGCTGCTGTGAGGGAAAACTCCGGAAAATATgcttaataaagaaataaaataaagaaataaaactgaataaatctTTTTTCAACATGTATTATCCATGCTTCTGGGTGTGGTGTTTATTTCTAGATGGTTTTCTTTACAAAAAGATGAATCAGATATAAAGCTTCACTTCTCAACTCGTTACGTGATTTAGttacgatgatgatgatgttgactgaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436801 lncRNA downstream 254379 284881 ~ 289879 (-) False pmm2
TU436824 lncRNA downstream 262355 281439 ~ 281903 (-) True G368725
TU436806 lncRNA downstream 299478 244177 ~ 244780 (-) True G368713
TU436775 lncRNA downstream 322502 219384 ~ 221756 (-) False si:dkeyp-75b4.8
TU436781 lncRNA downstream 350344 185834 ~ 193914 (-) True G368689
TU437043 lncRNA upstream 20381 578593 ~ 581860 (-) True G368903
TU437049 lncRNA upstream 33040 591252 ~ 592079 (-) False rasd3
TU437060 lncRNA upstream 113428 671640 ~ 673030 (-) True G368912
TU437062 lncRNA upstream 113428 671640 ~ 673030 (-) False G368912
TU437096 lncRNA upstream 142872 701084 ~ 701288 (-) True G368944
XM_026929184.2 mRNA downstream 19193 518604 ~ 525065 (-) True uncx4.1
XM_026929006.2 mRNA downstream 135969 352453 ~ 408289 (-) True elfn1b
XM_034300321.1 mRNA downstream 254350 284863 ~ 289908 (-) True pmm2
XM_034300280.1 mRNA downstream 266575 262153 ~ 277683 (-) True rgs11
XM_034300401.1 mRNA downstream 300084 234899 ~ 244174 (-) True percc1
XM_026929181.2 mRNA upstream 24286 582498 ~ 589396 (-) True plk1
XM_026929185.2 mRNA upstream 32924 591136 ~ 592595 (-) True rasd3
XM_034300403.1 mRNA upstream 87264 645476 ~ 651428 (-) True LOC113535779
XM_034300404.1 mRNA upstream 95241 653453 ~ 702345 (-) True prkcba
XM_026929176.2 mRNA upstream 144987 703199 ~ 711315 (-) True tlr2
XR_004577324.1 other downstream 317156 202654 ~ 227102 (-) True si:dkeyp-75b4.8
TU437316 other upstream 353341 911553 ~ 915683 (-) True G369125
TU437448 other upstream 717809 1276021 ~ 1276813 (-) True G369242
XR_004577318.1 other upstream 983150 1541362 ~ 1599744 (-) False nrp2a
TU437816 other upstream 1233975 1792187 ~ 1795224 (-) True G369586
XR_003403632.2 other upstream 2008545 2566757 ~ 2574471 (-) False LOC113535702

Expression Profile