RNA id: XM_034299928.1


Basic Information

Item Value
RNA id XM_034299928.1
length 1532
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC113535758
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2768629 ~ 2770657 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCCCTTAAAAAGTCCAGAATAGCCAAACTGTCCTCGTTAATTCACTGGAAGTGTACACATTCACTATCACATTCATGGCTTCATCAAGGAAGTATGCAGTGGGGTCCCACGCTGGCTGCTACAGAGGAACAGCAAGAACTTTGCTCTACagtgttacagttacaggcctgagtggctattgaTACTGTTCTACTaaagtgaacttcaaacattcatgcaacatttagGACTGAAACAACAGCAGATAATTGTGAGTAGCATTAACAacaagctaacattagttaTATGAGTGATAGCTCTAACTTTTATAAAAATCTTCTCAAAACAGGGTGGGTGTAAGATATGGtaaatgttatagatttaaccaagtactggagtaaaaggaggaggatgagaaggGCGTctacagctgtcctcagtgcagaGACACTTTCACTCCCAGGCCTGTTCTACACAGAAACAACATGCTggctgaagtggtggagaaactgaagaagactgaagtccaagctgcttctcctgctcactgttacgctgaacctggagatgtggagtgtgatttctgcactgggagaaaacacaaagccatGAAGTCCTCTCTGATGTGTCGGACCTCCTTTTGTGAAACTCATCTTAAACCTCATCTTGAACTTCCTACTTTGAAAAAGCACACCTTAATTGAAGCATCCTCAAAACTCCAAGAGAGAACTGAGAAACAGAGGGAGCTAAAGAAGGAGCAGATGAAATCCCAGCAGAGaatccaggagaagcagaagaaggtgcaggagctgaaacaggcTGTGAACATGATTAAGTCTCGTGCTCAGGCAGCAGTGGAGGACAGTGAGATTATCTTTTACTGAGATGATCAGCTTCATGGAGAAAAAGCGCTCAGAGGTGACGgagctgatcagagctcaggagaaggCTGAAGTGAGTCGAGCTGAACGACTCCTGgagcaactggagcaggagatcACTGATCTTAAGAGGAGAGTCACTCATATAAAGAGATCAGGAGGAAAGGATGGGATAAAGAGTGTGGGTTTGGAGTCCTGGAGTCCTGGAGTCCTGTGctgttcttcttcctctctctctttctatcacaACGACATTAAAACTGAGCTCAAAGTTCCATCATCCTCCagaataggagtgtatgtggatcacagtgcaggaagtctgtccttctacagcgtCTCTGACACGATGAAGTTCTtccacagagtccacaccacattcactcagcctctaTATGCTGGGTTTAGGGTTTTGGGAAATGTGAGGTTGTGTGACCCAAAATAACGGTGGATGGAaaaattcttgctcatttcctcatTGTTCCTCAATGACTGTGTTATTTTACTGAGCAGTGCCTTGATGAATCCTGTTTGTAGTTTTTGCAATAAATGGAAGTTAGTCATGACCGTACtcagtttttattcattcttgGATTTTTAACAGATGACATGATTAATGAATTgattaatgaaaatatatattatcaGCATGACATAGTGAGGTTACATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438290 lncRNA downstream 74052 2694149 ~ 2694577 (-) True G369988
TU438282 lncRNA downstream 90359 2673555 ~ 2678270 (-) True G369980
TU438216 lncRNA downstream 203377 2564712 ~ 2565252 (-) True G369927
TU438221 lncRNA downstream 205092 2562804 ~ 2563537 (-) True G369930
TU438217 lncRNA downstream 206171 2560880 ~ 2562458 (-) True G369928
TU438342 lncRNA upstream 596 2771253 ~ 2790054 (-) False G370023
TU438341 lncRNA upstream 1969 2772626 ~ 2774635 (-) True G370023
TU438346 lncRNA upstream 4225 2774882 ~ 2775395 (-) True G370024
TU438351 lncRNA upstream 12615 2783272 ~ 2790676 (-) True G370028
TU438334 lncRNA upstream 47946 2818603 ~ 2821314 (-) True G370019
XM_026928808.2 mRNA downstream 1136 2758969 ~ 2767493 (-) True tuba8l2
XM_026929212.2 mRNA downstream 11392 2747268 ~ 2757237 (-) True stk16
XM_034300320.1 mRNA downstream 11499 2749928 ~ 2757130 (-) False stk16
XM_034299942.1 mRNA downstream 39934 2718057 ~ 2728695 (-) True atic
XM_026929079.2 mRNA downstream 125943 2637335 ~ 2642686 (-) True cpo
XM_026928790.2 mRNA upstream 26611 2797268 ~ 2804129 (-) False LOC113535480
XM_026928789.2 mRNA upstream 26611 2797268 ~ 2804129 (-) True LOC113535480
XM_034300419.1 mRNA upstream 37660 2808317 ~ 2811609 (-) True LOC113535756
XM_026928792.2 mRNA upstream 53336 2823993 ~ 2827600 (-) True LOC113535483
XM_026928791.2 mRNA upstream 62956 2833613 ~ 2838789 (-) True LOC113535482
XR_003403632.2 other downstream 194158 2566757 ~ 2574471 (-) False LOC113535702
TU437816 other downstream 973405 1792187 ~ 1795224 (-) True G369586
XR_004577318.1 other downstream 1168885 1541362 ~ 1599744 (-) False nrp2a
TU437448 other downstream 1491816 1276021 ~ 1276813 (-) True G369242
TU437316 other downstream 1852946 911553 ~ 915683 (-) True G369125
TU438365 other upstream 72555 2843212 ~ 2853211 (-) True LOC117596167
XR_003403643.2 other upstream 1686778 4457435 ~ 4457541 (-) True LOC113535829
XR_004577365.1 other upstream 1688660 4459317 ~ 4459423 (-) True LOC117596196
XR_004577366.1 other upstream 1690552 4461209 ~ 4461315 (-) True LOC117596197
XR_004577367.1 other upstream 1692451 4463108 ~ 4463214 (-) True LOC117596198

Expression Profile